Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq301 116 4e-21 seq235 111 1e-19 >seq301 Length=55955 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || ||||| | |||||| || || || ||||| ||||||| Sbjct 34943 CCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATTATAATCGCTT 35002 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | ||| || ||||||||||| || | ||||||| ||| ||||| |||||| Sbjct 35003 AATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATCTGGAGGT 35062 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || ||| || || ||| | | ||| | || || | | | || ||| Sbjct 35063 ATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTCTACT 35122 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || |||||||| ||||| |||||||| Sbjct 35123 TCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 35169 >seq235 Length=65598 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | ||||| ||||| || ||||||||||| | || || | | ||| || Sbjct 33337 ACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACTCAATGTTCTACCATCTTCC 33278 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||||| || || | ||||||| || ||||| |||||||| || ||||||| | || Sbjct 33277 AATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGGTATTCCTTCCTTGT-CTTG 33219 Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| ||| |||| | ||| | || ||| || |||||||| | || | || || Sbjct 33218 TATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGACTTCTAGTGTGATTGTCTT 33159 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || ||||| ||||| |||||||| Sbjct 33158 GCCCGTAAGCGTTTTGACAAATATCTGCAT 33129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498190689360