Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq235 145 7e-30 seq301 136 4e-27 >seq235 Length=65598 Score = 145 bits (160), Expect = 7e-30 Identities = 199/276 (72%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 45102 TTTTATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATA 45161 |||| || | ||||||| | | || | || | ||| || || ||||| || |||||| Sbjct 33366 TTTTCTTCT-TTCCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATA 33308 Query 45162 TTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 || ||||| || | ||| || ||| ||||||||||| ||||| ||||||||| ||| Sbjct 33307 TTGTAATCACTCAATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGT 33248 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281 || || || || || ||||| || ||||| |||||| ||||| ||||| || |||| Sbjct 33247 TGATCTGGAGGTATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCG 33188 Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || |||||||| || || | || ||||| || || ||||| ||||| || ||||| Sbjct 33187 GTGGATTCGACTTCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATT 33128 Query 45342 GCGCGACCAATT---TAATAATTTAACTCTTATTTT 45374 | | | |||| ||| || ||| | ||||||| Sbjct 33127 GGGGTAAAAATTTTGTAAAAAAATAAATATTATTTT 33092 >seq301 Length=55955 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||||| ||| |||||||| || |||||||||||||| | ||| || | Sbjct 34955 CTTAATACTAAATGCAACGTAGATTCCTTCTGTATATTATAATCGCTTAATGTTCTACCA 35014 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||||||||||| ||||||||| || || || || || || ||||||||| Sbjct 35015 TCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATCTGGAGGTATTCCTTCTTTA 35074 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || || || || | ||||| || || ||| || ||||| ||||||| Sbjct 35075 TCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTCTACTTCAAGAGTAATT 35134 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || |||||||| ||||| || ||||| Sbjct 35135 GTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 35169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000719632440