Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq301 82.4 5e-11 >seq301 Length=55955 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39510 TACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTC 39569 ||| |||||||| || ||| || ||||||||||||||| || | |||| || Sbjct 34960 TACTAAATGCAACGTAGATTCCTTCTGTATATTATAATCGCTTAATGTTCTACCATCCTC 35019 Query 39570 CAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCA 39629 | ||||| || |||| || || | ||| ||||| | |||| |||||||| || Sbjct 35020 GAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATCTGGAGGTATTCCTTCTTTATCCTG 35079 Query 39630 TATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTT 39689 ||| || || | | ||| || || | |||| || || | |||||||||||| Sbjct 35080 TATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTCTACTTCAAGAGTAATTGTTTT 35139 Query 39690 ACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | |||||| || ||||||||||| Sbjct 35140 TCCTGTGAGAGTTTTAACAAAGATCTGCAT 35169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347367741464087