Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq301 134 5e-26 seq235 129 2e-24 seq46 118 4e-21 seq224 116 1e-20 seq257 111 6e-19 seq223 89.7 2e-12 >seq301 Length=55955 Score = 134 bits (148), Expect = 5e-26 Identities = 168/229 (73%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 391045 TTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAAT 391104 ||||| || | || || |||||||| || || || ||||| ||||||||||| || ||| Sbjct 35173 TTATA-TGCAGATCTTTGTTAAAACTCTCACAGGAAAAACAATTACTCTTGAAGTAGAAA 35115 Query 391105 CATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTG 391164 ||||||| || ||| | | || || || || ||||| |||||||| ||||| | Sbjct 35114 ATTCTGATACTATAGAAAATGTAAAGGCTAAGATACAGGATAAAGAAGGAATACCTCCAG 35055 Query 391165 ATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATT 391224 ||||||| | || || || |||| ||||| || || ||||| ||||| || |||| Sbjct 35054 ATCAACAGAGATTGATATTTGCAGGAAAACAGCTCGAGGATGGTAGAACATTAAGCGATT 34995 Query 391225 ATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||||||| | ||||| | || | || |||||||||||| | ||||| Sbjct 34994 ATAATATACAGAAGGAATCTACGTTGCATTTAGTATTAAGATTAAGAGG 34946 >seq235 Length=65598 Score = 129 bits (142), Expect = 2e-24 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| || || || || || || || || || || ||||| | Sbjct 33128 AATGCAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCAC 33187 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || ||| ||| | | ||| |||||| ||||| ||||||||||| ||||| ||||| Sbjct 33188 CGACTCCATAGAAAATGTCAAAGCAAAAATACAAGACAAGGAAGGAATACCTCCAGATCA 33247 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||| | || || || |||| |||||| | |||||||| ||||| ||| ||||| || Sbjct 33248 ACAAAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGATTACAA 33307 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | || || | |||||||| || || | ||| |||| ||| Sbjct 33308 TATCCAGAAAGAATCTACACTTCATTTGGTTCTTAGATTGAGGGGA 33353 >seq46 Length=107489 Score = 118 bits (130), Expect = 4e-21 Identities = 264/389 (68%), Gaps = 8/389 (2%) Strand=Plus/Plus Query 502351 AAATGAAAAAATATGGAACTAGAAACAGTTTGCTTACAGCACTAATGCCAACAGCATCTA 502410 |||| ||||| ||||| |||||| || || || | ||||| |||||||||| Sbjct 13577 AAATCAAAAAGCATGGAGTTAGAAATTCATTATTTGTTGCTGTTATGCCTACAGCATCTA 13636 Query 502411 CATCTCAACTATTAGGCAATTATGAATCATTTGAACCATTTACTTCTAATATATATACTA 502470 |||| ||| | || || | |||||| | ||||| || ||||| ||||| ||||| | Sbjct 13637 CATCCCAAATTTTGGGTTTTAATGAATGTATAGAACCTTTAACTTCAAATATTTATACCA 13696 Query 502471 GAAGAACTTTAGCAGGTGAATTTATAGTTGTTAATAAACATTTAATAAATGATTTGAATG 502530 ||||||||||||| || || ||| |||||| ||| ||||||| || ||||| | | Sbjct 13697 GAAGAACTTTAGCTGGAGATTTTCAAGTTGTAAATTCTTATTTAATTAAAGATTT-ACTA 13755 Query 502531 AAA-TCGGTGAATGGACTAATGAAATTAGACAAAAAGTAATTAATGATAATGGTTCTATT 502589 ||| | | |||| ||| ||||| | | | |||| || | | |||||||||| Sbjct 13756 AAACTTAATCTCTGGAATAAAGAAATAAAAAACCTAGTAGTTCAGAACGATGGTTCTATC 13815 Query 502590 CAAAATATATTA---CTACCTAATATAATTAAAAACATCTATCAAACTTCATATGAAATG 502646 ||| ||||| | |||| || ||||||| | | ||| ||| ||| ||| | Sbjct 13816 CAAGATATAGAAGCTATACCAAAAGAAATTAAATATTTGTATAGAACAGCATGGGAATTA 13875 Query 502647 AAACAAAAATATATAATAGATGGATGTTCT-ATACGGGGAGCTTATATAGATCAAACCCA 502705 ||| |||| ||| ||||| | | || ||| | | | ||| | |||||| | || Sbjct 13876 AAAATGAAATCTATTTTAGATTTAGCTGCTGATA-GAACACCATATGTTGATCAATCACA 13934 Query 502706 ATCTATGAATCTTTATTTTGC-ACAACCA 502733 |||| | ||| ||| | | || ||| ||| Sbjct 13935 ATCTCTTAATATTTTTATAGCTACACCCA 13963 Score = 107 bits (118), Expect = 8e-18 Identities = 306/475 (64%), Gaps = 0/475 (0%) Strand=Plus/Plus Query 501073 TAGAACCTCATCATGCGGATATATTTGATTTTTTGGAACTACGAAAAAATACTGGTGCCG 501132 ||||||| |||| || || | ||| ||||| ||| || |||| ||| ||| | Sbjct 12722 TAGAACCATGGCATGTAGAAATCTATGAATTTTTAGAATTAAGAAAGAATGTTGGAAAAG 12781 Query 501133 AATCAGAAAGAGCCCGTGATTTATTTTTAGCATTATGGGTTTCTGACTTATTTATGAATC 501192 | || |||| | | ||||||||||||| | | ||||| | || ||||| ||||| Sbjct 12782 ACGAAGTAAGAACAAGAGATTTATTTTTAGGACTTTGGGTACCAGATTTATTCATGAAAA 12841 Query 501193 AGGTTAAATTAAATAATGATTGGTATTTATTTTGTCCAGACAAAGCACCAGGATTAAATG 501252 || || |||||| ||||||| | |||| | | || | |||||| | ||| | Sbjct 12842 GAGTCGAAGAAAATAAAGATTGGTCACTTTTTTCTGCGGATACAGCACCTGATTTATGGG 12901 Query 501253 ATGTATATGGAGATGAATATGAAACTCTTTATTGGAAATATGTATCAGAAGAAAAATNNN 501312 | | | || || | || || |||||| |||||| | || ||| | Sbjct 12902 AGAAACACAATGAAGAGTTTGTAAAACTTTATGAAGAATATGAAGCAAAAGGATTGGCAA 12961 Query 501313 NNNNNNNNNNNAAAGCCCGGAAATTATGGGAAGCTATAATGACAGCACAGTTTGAAACTG 501372 ||||| | | | ||| || | ||||| | |||| | ||||| | Sbjct 12962 TAAGAACTGTAAAAGCTCAACATCTTTGGAAAACGATAATTGAAACACAAATAGAAACAG 13021 Query 501373 GTTCACCCtatatgttatataaagataatattaataaaaaatcaaaccagaaaaatatag 501432 || || | || | |||||||||| ||||| | | || |||||||||||||| | Sbjct 13022 GTAATCCTTTCATAATTTATAAAGATACGTGTAATAGATATTCTAACCAGAAAAATATTG 13081 Query 501433 gaataatTAGAAGTTCAAATTTATGTGCTGAAATTGTAGAATATTCAGATTCTACTGAAA 501492 || || | | |||| ||| | ||||| ||||| || ||| | | || ||||| Sbjct 13082 GATCTATAAAATGTTCTAATCTTTGTGCAGAAATAGTTGAAGTAACTAAGCCTGATGAAA 13141 Query 501493 CAGCTGCTTGTAATTTAGCTTCAATTGCTCTACCAAATTTTATTAAATCTAAAAA 501547 ||||| |||||||||||| ||||| | ||| |||| ||| |||||| ||| || Sbjct 13142 TAGCTGTTTGTAATTTAGCATCAATAGGTCTTCCAACTTTCATTAAAGATAACAA 13196 Score = 102 bits (112), Expect = 3e-16 Identities = 263/396 (66%), Gaps = 21/396 (5%) Strand=Plus/Plus Query 499575 ATTGATTATAACCGTGATTATTCATTTGAtttttttGGTATTAAAACAATGGAAAGAACC 499634 || |||||||| | |||| | | || ||| |||||| | ||||| || ||||| | Sbjct 12223 ATAGATTATAAGAGAGATTTTACTTTAAATTATTTTGGGGTGAAAACTTTGCAAAGATCG 12282 Query 499635 TATAT-------AACAAAACTAGATGGTCACTTAATTGAAAGACCTCAAGATGTGTTCAT 499687 ||| | || |||| | ||||| ||||||||| || ||||| || || Sbjct 12283 TATTTGTTAAAAAATAAAAATTTATGGTA-------TGAAAGACCACAGGATGTTTTTAT 12335 Query 499688 GCGAGTAGCATCTCTTGTACATTGTGGTGATTTACAAAAAACAATAGATTCATATAATTT 499747 ||| ||||| | | ||| || || || | | | || | | |||||||| Sbjct 12336 GCGTGTAGCCTTAGAAATTCATGATGAAGAAATAGATGATGCGTTACAGACGTATAATTT 12395 Query 499748 AATGTCaaaaaaaTATTTTACTCATGCTAGTCCTACATTATTTAATGCAGGAA-ATAAAA 499806 |||||| ||||||||||||| ||| || | |||||||| |||||| | |||| | | || Sbjct 12396 AATGTCTAAAAAATATTTTATTCACGCAACACCTACATTGTTTAATTCCGGAACAAAGAA 12455 Query 499807 AAGGTAATTTAGTATCTTGTTTCCTTTTAGGT---ACAGAAGATTCCATGACAGGTAT-T 499862 | |||| ||| || ||||| ||||| | | | ||| ||||| || |||||| | Sbjct 12456 TAATCAATTGAGT-TCATGTTTTCTTTTGGATATCAAAGAGGATTCTATAGAAGGTATAT 12514 Query 499863 TCAAAAACTTGGAATGATGTAGCTCATATCTCAAAATGGGGTGGTGGAATTGGTATTCAT 499922 || | | || || ||| |||| ||| || ||| | | || || | || ||| || Sbjct 12515 TCGATACTGTGAAAAACTGT-GCTCTTATATCTAAAAGTGCAGGAGGTCTAGGAATTAAT 12573 Query 499923 ATTTCAAATGTTCGTGCAAAAGGTTCTGAAATTAAA 499958 ||| ||||| | |||||||| ||| ||| ||| Sbjct 12574 ATTCATAATGTGAGAGCAAAAGGATCTACAATAAAA 12609 >seq224 Length=66361 Score = 116 bits (128), Expect = 1e-20 Identities = 266/394 (68%), Gaps = 21/394 (5%) Strand=Plus/Plus Query 361421 AGAACATATATTATTACGTCCTGGGATGTATATTGGGTCTGTAAGTAAAAATACTGAGCC 361480 ||| ||||||||||| ||||||| | ||||| ||||| ||| || | ||| Sbjct 10518 AGAGCATATATTATTGCGTCCTGATACTTATATAGGGTCGGTAG---AATGTGAGGAGAA 10574 Query 361481 CA-TGTGGTTATATGAA--GATAATAAGATGCaaaaaaaaGATATAACTTTTATACCTGG 361537 | | || ||| | | |||||||| || || ||| |||| |||||| | ||||| Sbjct 10575 GAATATGTATATTTTATCCGATAATAAAATTGTAAGTAAAAATATTACTTTTGTTCCTGG 10634 Query 361538 TCTTTATAAAATTTATGATGAAATTATTGTAAATGCACGTGATCATAGTATTAATGATAA 361597 | | |||||||| | ||||||||| ||||| |||||| ||| ||| || | |||| Sbjct 10635 TTTATATAAAATATTTGATGAAATAATTGTTAATGCAGCAGATAATAAAATAAGAGATAG 10694 Query 361598 AAGTTGTAATTCTATTGAGATTGAAGTAAATACTGATGA--AGGATATTTT----TCAGT 361651 | || | |||| ||| |||| ||| |||||| || || | | || || Sbjct 10695 TA-----AAATGAATTGT-ATTAAAGTGGATATTGATGAGAAGAATGGTGTCATATCTGT 10748 Query 361652 TTATAATAATGGTGATGAAGGAATTCCAGTCAAAGAACATGAAACACATAAAACACTTAT 361711 |||||||||||| |||| | || || || ||| ||||| || | |||| | | | Sbjct 10749 TTATAATAATGGAGATG---GTATACCTGTGAAAATACATGCAAAGGAGAAAATATATGT 10805 Query 361712 TCCTAGTATGATCTTTGGAGAATTACTAACTAGTTCAAATTATGATGATTCTaaaaaaaG 361771 |||| |||| ||||| | || |||| ||||| |||||||||||| | | || | Sbjct 10806 TCCTGAATTGATTTTTGGGCAGTTGTTAACCAGTTCTAATTATGATGATGATGAGAAGAA 10865 Query 361772 AACTACAGGCGGAATGAATGGATTAGGTTCTAAA 361805 ||| || |||| ||||||| ||| ||||| Sbjct 10866 GGTTACTGGTGGAAGAAATGGATATGGTGCTAAA 10899 Score = 105 bits (116), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 363757 TAGAAGATGCTAATAAAGCAGGAACAAAAGATGCTCATAAATGTGGATTATATTTAGCAG 363816 ||||||||||||| | ||||||||| ||| || | ||||| ||| |||| ||| Sbjct 11702 TAGAAGATGCTAACAGAGCAGGAACTGTTGATTCTTACAAATGCTCTTTAATTTTAACAG 11761 Query 363817 AGGGAGATTCTGCTCTTTCTATGATTCTGTCAGGGTTA--TCAAGTAAAGATAGAAATTT 363874 | |||||||| ||| | | || ||||||| || || || || | | || Sbjct 11762 AAGGAGATTCAGCTAAGACATTTGTTATGTCAGGTATAGGTCTTGT--AGGAAAAGATCA 11819 Query 363875 TTATGGTGCCTTTCCGTTAAAAGGAAAATTATTAAATGTAAGAGAAGCATCAGTTAAACA 363934 |||||||| ||||| || ||||| ||| | ||||||||| ||||||| || ||||| Sbjct 11820 TTATGGTGTATTTCCTTTGAAAGGTAAACTTTTAAATGTACGAGAAGCTTCTCACAAACA 11879 Query 363935 AATTATGGGAAATGATGAGATATCAAACCTTaaaaaaaTTTTAGGATTA 363983 ||||||| |||| | || | ||| |||||||||| |||||||| Sbjct 11880 GATTATGGAAAATAAAGAATTGATAAATATTAAAAAAATAATAGGATTA 11928 >seq257 Length=62978 Score = 111 bits (122), Expect = 6e-19 Identities = 555/859 (65%), Gaps = 35/859 (4%) Strand=Plus/Minus Query 496953 TTTCCTATTAAATATCATAAAATCTGGGATTTATATaaaaaaaTGGAA---GCAGCTTTT 497009 ||||| || ||||| || || |||||||||||||| | || | || | ||| Sbjct 56585 TTTCCAATAAAATACGATCGTATATGGGATTTATATAAGCA---GGCACTTTCATCGTTT 56529 Query 497010 TGGACAGCTGAAGAAATAGATTGGTCTAAAGATAAACATGATTTTAAAAAATTAAATCAA 497069 ||||| ||||||||| |||||| ||||| ||| | | |||| || | ||| | Sbjct 56528 TGGACTGCTGAAGAAGTAGATTTATCTAATGATTTAGACGATTGGAATGGTCTTAATGAT 56469 Query 497070 GATGAACAACGATTTATTAAATATGTATTAGCAtttttttCGGCAAGTGATACAATTGTA 497129 |||||| || ||||| | ||||| || ||||||||| | ||| ||| ||||| Sbjct 56468 GATGAAAGACATTTTATAAGTTATGTGTTGGCATTTTTTGCAGCATCAGATGGGATTGTT 56409 Query 497130 AATATTAATTTAGGAGAAAGATTATCTCATGAAGTTCAACCACTTGAAGCCAAAATTGCT 497189 ||| ||| | ||||| || | |||||||| || ||||| | | || | Sbjct 56408 AATGAAAATCTTTTAGAAAATTTTGCAGCGGAAGTTCAGATACCAGAAGCTAGATGTGTT 56349 Query 497190 TATACTTTTCAAATGATGATGGAAGGGATCCATAGTGAAGTATATGCACTTCAAATAGAT 497249 ||| || ||||| ||||| ||| || ||| ||| | || || | | |||||| Sbjct 56348 TATGGATTCCAAATAATGATAGAAAATATACATTCTGAGATGTACTCATTGCTAATAGAA 56289 Query 497250 A-ATATAATAGAAGATGTTCAAGAGAGAAAAGATATTTTA---AATTCAATAGAAACTGT 497305 | ||||| |||| | ||||||| ||||||| ||||| || |||| || | Sbjct 56288 ACATATATTAGA----GAACAAGAGAAAAAAGATTTTTTATTTAACGCAATTTCTACAAT 56233 Query 497306 ACCCTGTATTAAAGCAAAAACTGATTGGATGTTAAAATGGGTTAAATCTGAAGA---AAG 497362 ||| |||||| ||| | || |||| | |||||| | | | || | | | Sbjct 56232 ACCAACAATTAAAAATAAAGCAGACTGGACTATGAAATGGATAACGGATAAAAAATCATG 56173 Query 497363 TTTTGCAACAAGAATGGTGGCACAAGTAATTTCTGAAGGATTAttttttagtggaagttt 497422 |||||| |||||||| | ||| | ||||| | || || |||| ||| Sbjct 56172 TTTTGCTACAAGAATAATTGCATTTGCGTGCGTAGAAGGTATTTTCTTCTCTGGATCTTT 56113 Query 497423 ttgtgctattttttGG-TTaaaaaataaaaaTATAATGCCTGGT-TTAATCTCATCAAAT 497480 | | || || ||| |||||||| || ||||||| ||| ||| | || || ||| Sbjct 56112 TGCATCCATATTCTGGCTTAAAAAACGTGGAT-TAATGCCAGGTCTTACTTTC-TCCAAT 56055 Query 497481 GAATTAATTGCACGGGATGAAGGAATGCATTGTGATTATAGTAT-TATGTTATAT-CACA 497538 |||||||| | ||||||||| ||||| ||| | | | || | | ||| || | || Sbjct 56054 GAATTAATCAGTAGAGATGAAGGAGTGCATGTTGAAT-TTGCATGTCTCTTAAATGCTCA 55996 Query 497539 TGCTTCAAAATAAACTGTCACAAGA--AAAAATTCAAC-AAATGTTTAAAGATGCAGTGG 497595 ||| | || ||| | ||| | | ||| | | | | |||| ||||||| ||||| | Sbjct 55995 --CTT-AGAAGAAAAAG-CACCATATGAAACAGTAATCGAAATAGTTAAAGAAGCAGTAG 55940 Query 497596 AAACAGAAAGAATATTTATTTGTGAAAGCTTACCATGCTCCTTATTAGGAATGAA-TGCG 497654 || ||| | |||| ||| |||||| |||| ||| | |||||||| || Sbjct 55939 CAATTGAACAAGAATTTGTTTCTGAAAGTCTACCCGTAAGTTTAATTGGAATGAACTGTA 55880 Query 497655 GACCTAATGGAACAATACATTAAATTTGTGGCTGACCAATTAATTA-TTAAATTAGGATA 497713 | || ||| | ||||| ||||||||||||| |||| ||| || | |||||| Sbjct 55879 AATCT-ATGTGTAATTACATAGAATTTGTGGCTGA-CAATCTCTTAGTTGATCTAGGATT 55822 Query 497714 TAATAAAATATTTAAAGTAGATAATCCATTTACATGGATGGAAGCAATTTCAATTGAAGG 497773 |||| | || || ||||||||| | |||||| || || | |||| Sbjct 55821 CTCTAAACATTACAACACTGAAAATCCATTTGATTTCATGGAAAATATATCTTTACAAGG 55762 Query 497774 TAAAACTAATTTCTTTGAA 497792 ||||| |||||||||||| Sbjct 55761 AAAAACCAATTTCTTTGAA 55743 >seq223 Length=233459 Score = 89.7 bits (98), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 96068 GGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAAGGATAAAAGTACTTTACTAATG 96127 ||||| | |||||| | ||| |||||| ||| ||||| | || || | || Sbjct 208037 GGATCTTTAGGATTGGCATCATGTAATAAAGATGATATAGATAATAACACCTTTCCAACT 208096 Query 96128 TTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACAAATTGCACCTGTAGTACTA 96187 | | ||| || ||||| | |||||||||||||||||||| ||| ||| | | Sbjct 208097 GTGAGTGCAGGACTCCATTCGTTTTTTAAAATATCTAAACATATTTGACC---ATCCTTT 208153 Query 96188 ATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAGGAGGCTTATATGGATAGTCT 96247 ||||| ||||||||| ||||| ||| | | |||||| || | | ||||||| | Sbjct 208154 ATATTACAATGATAAATTCTTGTTTTGAATGTCACTTTAGGTGGATGAAATGGATAATTA 208213 Query 96248 TCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCATAGGGTGTTCCTGAAGGGCCA 96307 | || | |||| |||||||| |||| |||| | | ||| ||||| || | ||| || Sbjct 208214 GCTGGGAGTATAATCTCTAATTGAAATATTCCATCTTGATATGGTGTGCCAGGAGGACCT 208273 Query 96308 ACTAAAGTTCCATCCCAT 96325 | | ||| | |||||| Sbjct 208274 ATAATAGTGGCTTCCCAT 208291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975707287201412