Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq257 152 7e-32 seq46 105 8e-18 seq224 104 3e-17 >seq257 Length=62978 Score = 152 bits (168), Expect = 7e-32 Identities = 568/878 (65%), Gaps = 27/878 (3%) Strand=Plus/Plus Query 115070 CGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCATAAAATCAA 115129 |||| | |||||||| || || ||||| || | | |||||||| ||||| ||||||| Sbjct 55733 CGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCCATGAAATCAA 55792 Query 115130 AGGGATTTTTCGTGTTCCAGATTTTATTGTGACCCACTTGTTTTGATAATCGAT---CCG 115186 | ||||||| ||||| | |||| | || | || | | ||| ||| | | Sbjct 55793 ATGGATTTTCAGTGTTGTAATGTTTA--GAGAATC-CTAGATCAACTAAGAGATTGTCAG 55849 Query 115187 CAACATATTCGATATACTCCGACAT---TTTACCGGAATTCATACCTATGAGACTACACG 115243 | ||| |||| || || | |||| ||||| | ||||| || || | ||| | Sbjct 55850 CCACAAATTCTATGTAATTACACATAGATTTACAG---TTCATTCCAATTAAACTTACGG 55906 Query 115244 GAAGTGCGTCCGTAATGAATTCTTTTTCGATTGAAACGGCGTCTCTTATAATTTCTTCAA 115303 | || || | || ||||||| ||| |||| || || ||| | | ||||| | Sbjct 55907 GTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCGATTA 55966 Query 115304 TTGTATTTTGAGATGGTTTGTTTTTTAACATGTTGAATAATTCA---ACC-GCAAATTCT 115359 ||| | | | || ||| | || ||| ||| | || | || |||||||| Sbjct 55967 CTGTTTCATATGGTGCTTTTTCTTCTAAG----TGAGCATTTAAGAGACATGCAAATTCA 56022 Query 115360 TGGTGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGTAAC 115419 |||| |||||||||| ||| || | |||||| ||| | |||||| | ||| Sbjct 56023 ACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTAAT 56082 Query 115420 CCTCTCTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACA 115479 || | ||||| | ||| || || | |||| || |||||||| |||||||| || Sbjct 56083 CCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTACG 56142 Query 115480 CACGCAAAGGCTAATAAACGTTCAGCAAATGGTCGTTTCTTATCA---AACCACTTCATA 115536 |||||||| || | || | | |||||| | ||| ||||| | ||| |||||| Sbjct 56143 CACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCATTTCATA 56202 Query 115537 GCCCATTTCGCCTTTCTTTCGATACACGGAATTGTTTGAATTGCTTCGAATAATTGTT-T 115595 | ||| | || || ||| || || ||||| |||||| | ||||| | | Sbjct 56203 GTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAAAAATCT 56262 Query 115596 CTTTTCGCTAGAATTTTTTATATACTTGTCTATGAGTTTACTGTACGTTTCACCGTGTAC 115655 ||||| || | | | | ||||| | ||||| || |||| | ||| |||| Sbjct 56263 TTTTTCTCTTGT-TCTCTAATATATGTTTCTATTAGCAATGAGTACATCTCAGAATGTAT 56321 Query 115656 CATTTC-ATTGTGAGATTGATAGGCATAAAATGATCGAGCCTCCGTAAGTTGTATTTCAT 115714 |||| || | | | || | |||||| ||| ||| || | | || | ||| Sbjct 56322 ATTTTCTATCATTATTTGGA-ATCCATAAACACATCTAGCTTCTGGTATCTGAACTTCCG 56380 Query 115715 CTGCAAAATTATTATTTATATTTTCAAAAACTATACCATCAGAACCAGCaaaaaaaGCTA 115774 |||||||||| | | ||||||| ||| || ||||| || | |||||||| || | Sbjct 56381 CTGCAAAATTTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAAATGCCA 56440 Query 115775 AAATATATTTTATAAAATGTTTTTCATTATCACTTAATTCATTCCAATCATCCATATCTT 115834 | | ||| ||||||||||| |||||| |||| | | |||||||||| || | ||| | Sbjct 56441 ACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTCTAAATCAT 56500 Query 115835 TGGAAAAGTCTATCTCTTCAGCGGTCCAATTTGACATTTGGGCCTTTTTATACAAAGTCC 115894 | || || |||| |||||||| |||||| || | |||| ||||| ||| || Sbjct 56501 TAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATATAAATCCC 56560 Query 115895 ATAAATTTTCATGTTCTATTGGAAATACAGTAAACCTA 115932 ||| | || | || ||||||||| | | ||| ||| Sbjct 56561 ATATACGATCGTATTTTATTGGAAACAAAACAAATCTA 56598 >seq46 Length=107489 Score = 105 bits (116), Expect = 8e-18 Identities = 675/1077 (63%), Gaps = 33/1077 (3%) Strand=Plus/Minus Query 104526 TTCCCATACGGTTTTATACAATTCCTTAAGATCATCGGGTATATCAATAATGTTTTGAAC 104585 ||||||| | ||| ||||||| | |||| || | |||||| | || | ||| | Sbjct 13872 TTCCCATGCTGTTCTATACAAATATTTAATTTCTTTTGGTATAGCTTCTATATCTTGGAT 13813 Query 104586 AGACCCATTTGCCTTCACCATAAGATCTTTCATTTCCTTCGACCAGAGTCCACGTTCTTT 104645 ||| |||| || || | || | ||| ||||| || |||||| | ||| | Sbjct 13812 AGAACCATCGTTCTGAACTACTAGGTTTTTTATTTCTTTATTCCAGAGATTAAGTTTTAG 13753 Query 104646 CAAATCGTTTACTAAATGTTTGTTTACGACGACAAATTCACCCGCGAGTGTTCGTCTCAA 104705 ||||| || | ||||| ||||| || ||| || || || | |||| ||| Sbjct 13752 TAAATCTTTAATTAAATAAGAATTTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGT 13693 Query 104706 ATAGATATTGGTCGTATACGGTTCGAAACACTCGTTGTTCCCTAAAATCTGGGATGTGGA 104765 ||| ||||| | || | ||||| | ||| || || || ||||| |||||||| || Sbjct 13692 ATAAATATTTGAAGTTAAAGGTTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGA 13633 Query 104766 TGCGGTAGGCATAGGTGCAAGAAGAAGACTATTCATAGTTCCTTTCTTAACAAGTTTA-- 104823 ||| ||||||||| |||| || | ||| || ||| | ||| | ||| Sbjct 13632 TGCTGTAGGCATAACAGCAACAAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTC 13573 Query 104824 -CGCATGGCATTCCAATCGTATCGACCACTAAACTTTGGGTCTCGATCCC-ACATATCGA 104881 | || || |||||| || || || | || | | | ||||||| | Sbjct 13572 TCTCAAAATATCCCAATCTAATA-------AATCTGTTGGGGTGGTTTTATACATATCAA 13520 Query 104882 ATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAGGACCGTACATTT 104941 | || | | ||| | ||| || || || |||| | | ||||| |||| ||| ||| || Sbjct 13519 AATGTAATAGACCCTGACTCAATGGAGATCCCTCATATGTTTCGTAAGTACCATACCGTT 13460 Query 104942 CGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGAATATATCAATGT 105001 | || | |||| ||||| | || | | || ||||||||||| || | | | Sbjct 13459 CTGCTAATTCAGTACTTGATTCCAATGCAGAATAATAAATAGTTTCGAAAATTTGCTTAT 13400 Query 105002 TGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATGATAAACACGTCAGCGA 105061 | | | ||| | |||||| | | |||| |||||||| || ||||| || || || | Sbjct 13399 TTAATAATCTAGCTTCTTCACTATCAAATGGCATTCTTAGAATAATAAATACATCGGCTA 13340 Query 105062 GACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTTTCCCGTT--TTC 105119 || |||||||||||||| || ||||| || | |||||| | ||| ||| ||| Sbjct 13339 ATCCTTGAACACCAATACCCATAGGTCTATGTCTCATATT--ACTTTTTTTAGTTTCTTC 13282 Query 105120 GGTTGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAACCA-TTTTCGTAA 105178 ||| || || | || || ||| | | || || | || | |||| || Sbjct 13281 TACTGGATATTTTGTTCTGTCTATTACCCTATCCAAATTTTTTACAAGAACTTTTACTAT 13222 Query 105179 CACGATGTAACTCTTCATG--GTTAAACTCGTTCTTCTCGACATCAACGTATTTTGGTAA 105236 | | | | | | || ||| | ||| | ||| | | | || | | |||| | Sbjct 13221 CTC--TTTTAGT-TTTATGAAATCAAATTTGTTAT------CTTTAATGAAAGTTGGAAG 13171 Query 105237 CGCGATTGATGCGAGATTACATACGGCGGTTTCTTC---CTTATCCGTAAACTCCAGAAT 105293 | |||||||| | |||||| || || |||| || |||| || | || | || Sbjct 13170 ACCTATTGATGCTAAATTACAAACAGCTATTTCATCAGGCTTA---GTTACTTCAACTAT 13114 Query 105294 TTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACTTTTCATT 105353 ||||| ||| | ||| || |||| || | |||| | ||| ||||| || | | ||| Sbjct 13113 TTCTGCACAAAGATTAGAACATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATT 13054 Query 105354 ACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTTAATAATTGC 105413 ||||| ||||| |||| || | || | || ||||| |||| | || ||| || | Sbjct 13053 ACACGTATCTTTATAAATTATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGT 12994 Query 105414 TTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTCGTATTTCTC 105473 |||||||| | |||| |||| | | |||| | |||| | ||| |||| || Sbjct 12993 TTTCCAAAGATGTTGAGCTTTTACAGTTCTTATTGCCAATCCTTTTGCTTCATATTCTTC 12934 Query 105474 GTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCAGGACA 105533 ||||| | | ||||||||| | || || | | | | ||| ||| | | | Sbjct 12933 ATAAAGTTTTACAAACTCTTCATTGTGTTTCTCCCATAAATCAGGTGCTGTATCCGCAGA 12874 Query 105534 AAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCA 105590 ||| | |||||||| || ||| || | ||||||||| |||||||| | ||| Sbjct 12873 AAAAAGTGACCAATCTTTATTTTCTTCGACTCTTTTCATGAATAAATCTGGTACCCA 12817 >seq224 Length=66361 Score = 104 bits (114), Expect = 3e-17 Identities = 304/463 (66%), Gaps = 8/463 (2%) Strand=Plus/Minus Query 183122 ATATCTAACGGATTAAACGGTGGTATATATGAACTAAATCCGGTACCAATACCTTCAGTT 183181 |||||| |||||| | ||| || ||| ||| |||| ||||| || ||||| | Sbjct 12944 ATATCTTTAGGATTATAATTTGGAATGCATGTACTCCATCCTGTACCTATTCCTTCTGAA 12885 Query 183182 CCATTTACCAAAACGGTCGGTAATATAGGAACATAATAGTCAGGTTCGATTTGTTTACCG 183241 |||||||| | || | || | ||| || | |||||| | |||||| || | | Sbjct 12884 CCATTTACAAGTACCATAGGAATTATTGGGATATAATAATTAGGTTCTATACTCTGATTT 12825 Query 183242 TCGTCGTCGAGATAGTTTAATACTGGATCATCTTTGGGAT--CAAAAAGTA-TTCTCGCG 183298 || || | || | |||| | || ||||| || || |||||| || || | | Sbjct 12824 TCTTCTACTAGGAAATTTAGAATAGGTTCATC---GGAATTACAAAAAATAGTTTTGGTA 12768 Query 183299 TTTTTAGTCAATTTTGTAAATATATACCT-GGTTTGACTCGCGTCTTTACCACCCATGAG 183357 | | | ||||||||| || ||||| || | || || |||||||||||| ||| Sbjct 12767 ATATCCATTAATTTTGTATTAATGTACCTTGGACTAGCT-GCATCTTTACCACCCTTGAT 12709 Query 183358 ACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAAAATT 183417 | | || ||||| ||| ||| | | | ||| || ||| | || || ||||| Sbjct 12708 TCTACTTCCGAATTGTCCATCTGGATATAAGATATTTATGTTAGTAGATCCAACAAAATC 12649 Query 183418 ATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCACCGTGGTGATACGATGTTTT 183477 | ||||| |||| ||| ||| ||| ||||| ||||||||| |||||| |||| | Sbjct 12648 ACTTGCTAGATTTATAATAGTAGATGCTAAAGATTGTTCACCGTGATGATACATTGTTAT 12589 Query 183478 TTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTCAGATGTAAGATTCTTTGTGAA 183537 | | || |||| | |||| || || || |||||| | ||| ||||| || | || Sbjct 12588 CTGAGCAATGTATCCCACTAACTGTGCTACTTTCATTGGATTTGTTAGATTTCTTTTAAA 12529 Query 183538 ACACGCGTATAACACTTTTCGTTGGGATGGTTTTAAACCATCT 183580 ||| | | | ||||||| ||| |||||| | |||||| Sbjct 12528 ACAACCAAAAAGTACTTTTCTTTGTCCTGGTTTCATTCCATCT 12486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129314708760