Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq46 174 1e-37 seq13 165 5e-35 seq224 163 2e-34 seq257 131 1e-24 seq423 123 2e-22 seq394 107 1e-17 seq334 95.1 8e-14 seq212 95.1 8e-14 seq235 93.3 3e-13 seq335 87.8 1e-11 seq57 87.8 1e-11 >seq46 Length=107489 Score = 174 bits (192), Expect = 1e-37 Identities = 980/1547 (63%), Gaps = 65/1547 (4%) Strand=Plus/Minus Query 591520 ATAATACATTCCCGT-TTTAAGTCCTTTGCGATATGCATAAAATAGACATGAATTTAATT 591578 |||||||||||| || ||||| | ||| | | | ||||||| | ||| ||| Sbjct 14031 ATAATACATTCCAGTCTTTAATTGTTTTTTG-TGTCCATAAAAATG-CATACTAGTAAGC 13974 Query 591579 TGACAAAATCTGGTT-TCTCAATAAATATATTCATACTTTGTGTTTGATCTATAAATGGA 591637 || || || ||| | | | ||||| ||||| | | ||||| |||||| | | |||| Sbjct 13973 TGTGAATATGTGGGTGTAGCTATAAAAATATTAAGAGATTGTGATTGATCAACATATGGT 13914 Query 591638 GCTCGATCAGCTGCCATATCAATGATAGATTGTTGTGGAATTTCCCAAACTGTTCTATAA 591697 | || |||||| || | ||| | ||||||| | | |||||| |||||||||| Sbjct 13913 GTTCTATCAGCAGCTAAATCTAAAATAGATTTCATTTTTAATTCCCATGCTGTTCTATAC 13854 Query 591698 ATATTTTTAATATTTTGTGGTATATTNNNNNNNNNTGCTATGGATCCTTGATAATATTTT 591757 | || |||||| | || ||||||| | || || || | | | | Sbjct 13853 AAATATTTAATTTCTTTTGGTATAGCTTCTATATCTTGGATAGAACCATCGTTCTGAACT 13794 Query 591758 ATAAGATCCACCATATCTGAATTCCATAAACCGAGTTCCATTAAATCTTTAATTAGATAT 591817 | || | || ||| |||||| | | |||| | |||||||||||||| ||| Sbjct 13793 ACTAGGTTTTTTATTTCTTTATTCCAGAGATTAAGTTTTAGTAAATCTTTAATTAAATAA 13734 Query 591818 TTGTTAATGACATAATAATCTCCTGCTAAAGTACTTCTTGAATAAATATTTTCGGTAAAT 591877 || | || | | ||||||| |||||||| ||||| | |||||||||| || || Sbjct 13733 GAATTTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGTATAAATATTTGAAGTTAAA 13674 Query 591878 GGTTCAATACATTCATTATATCCTTTAATTTGAGATGTACTTGCTGTTGGCATACATGTA 591937 ||||| |||||||||||| | || |||||| |||||| |||||| |||||| | | Sbjct 13673 GGTTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGATGCTGTAGGCATAACAGCA 13614 Query 591938 GTAGTTAAACTGTTTCTAACACCATATATCATTATCTGTTCCCGAAGAGTTTTCCAATCC 591997 | ||| |||||||| |||| | | || | ||| | | | | | |||||| Sbjct 13613 ACAAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTCTCTCAAAATATCCCAATC- 13555 Query 591998 CACATTCCACTTAATTTATCT-TCACCAAGATTCCAT--AAATCAAACTGGAATTTACCT 592054 |||| |||| | | || || | |||||| || ||| ||| Sbjct 13554 -----------TAATAAATCTGTTGGGGTGGTTTTATACATATCAAAATGTAATAGACCC 13506 Query 592055 TTTGAAAGTGGACTTCCCCAAAAGGTTTCATATGGACCAGATTCTTTGGCCATTT--GTA 592112 | | |||| |||| | | ||||| || | |||| | || || | || ||| Sbjct 13505 TGACTCAATGGAGATCCCTCATATGTTTCGTAAGTACCATACCGTTCTGCTAATTCAGTA 13446 Query 592113 -ATGATTCTGTCATTGTTCCAAAATATATAGTTTCAAATATTTTCCTATTAAGATCTCGA 592171 |||||| || || | |||| |||||||| || |||| | |||| | || | Sbjct 13445 CTTGATTC---CAATGCAGAATAATAAATAGTTTCGAAAATTTGCTTATTTAATAATCTA 13389 Query 592172 GCAATATCAGAATCAAATGGAATTTTAAATATAGCAAACACATCGGCTAATCCTTGTACA 592231 || ||| ||||||||| ||| | | ||| ||| ||||||||||||||||| ||| Sbjct 13388 GCTTCTTCACTATCAAATGGCATTCTTAGAATAATAAATACATCGGCTAATCCTTGAACA 13329 Query 592232 CCAACGCCAATAGGTCTATGGCGTAAATTTGAAACACGT----GTTTTTTCTACTGGATA 592287 |||| || ||||||||||| | | ||| || | |||| |||||||||||| Sbjct 13328 CCAATACCCATAGGTCTATGTCTCATATT----ACTTTTTTTAGTTTCTTCTACTGGATA 13273 Query 592288 ATAATTTACATCAATAATATTATTTAAATTTCTTGTAATAATTCTTGCGACCTTGTACAA 592347 | || || || | ||| |||||| || || || | || | | || | | Sbjct 13272 TTTTGTTCTGTCTATTACCCTATCCAAATTTTTTACAAGAACTTTTACTATCTCTTTTAG 13213 Query 592348 TTTATTATAATCAAACTCTGGAACACCGTTTTCATGAATAATAAATTTAGGTAAACAAAT 592407 ||| | ||||||| | ||| || | |||| || | || | || || Sbjct 13212 TTTTATGAAATCAAATT---------TGTTATCTT---TAATGAAAGTTGGAAGACCTAT 13165 Query 592408 TGATGACAAATTACAAACTGCATATTCATCTGCAGATGAG--AATTCTACAATTTCACAA 592465 ||||| ||||||||||| || |||||| | | | || | ||| || ||||| | Sbjct 13164 TGATGCTAAATTACAAACAGCTATTTCATCAG--GCTTAGTTACTTCAACTATTTCTGCA 13107 Query 592466 CAAAGATTTGAGCCATTAATTACGCCTATATTAATCTGATTTGATTTTTGATTGATAGCA 592525 |||||||| || | || || || ||||| |||| || || | | ||| | | Sbjct 13106 CAAAGATTAGAACATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATTACACGTA 13047 Query 592526 TCTTTAAACAATATGTATGGTACACCTGTTTCAATTTGTGTTTCCATTATTTTAAACCAT 592585 |||||| | | |||| | || ||||||||| ||||||||||| ||||| | ||| Sbjct 13046 TCTTTATAAATTATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGTTTTCCAA 12987 Query 592586 AAATCTCTTGCTTTGATTTGTTTTATAAATCTACCCTCAT-TTTCATATTTAAGATAAGC 592644 | || | ||||| | | |||| | | ||| | |||||||| |||| Sbjct 12986 AGATGTTGAGCTTTTACAGTTCTTAT-TGCCAATCCTTTTGCTTCATATTCTTCATAAAG 12928 Query 592645 TTTATTAAATTCTTCACCATATTT-TCCTACAATATCTGGACATTGTGAT--GGACACAT 592701 ||| ||| |||||| | ||| ||| | || ||| || ||| || | | | | Sbjct 12927 TTTTACAAACTCTTCATTGTGTTTCTCCCATAA-ATCAGG-TGCTGT-ATCCGCAGAAAA 12871 Query 592702 AAGTGACCAATTTTCATCTTTTTCAACACGATCCATGAAAATAT-TATTAATCATTAATC 592760 ||||||||||| || || || ||| || | | |||||| | || | || || | || Sbjct 12870 AAGTGACCAATCTTTATTTTCTTCGACTCTTTTCATGAATAAATCTGGTACCCA-AAGTC 12812 Query 592761 CAAGGAATAAATCTCTGGCTCTTTCCGTTTCAGCACCAGTATTTTTCTTTAGATCAAGGA 592820 | | ||||||||||| | |||| | || ||| ||| || ||| || | | Sbjct 12811 CTAAAAATAAATCTCTTGTTCTTACTTCGTCTTTTCCAACATTCTTTCTTAATTCTAAAA 12752 Query 592821 AGAAAAATATATCACCATGCCAAGGTTCAATAAATACCGCAAATGAACCAGCTC---TTT 592877 | | | || || ||||||| ||||| || |||| || | || ||||| || ||| Sbjct 12751 ATTCATAGATTTCTACATGCCATGGTTCTATGTATACTGCCATTGCACCAGGTCTCTTTT 12692 Query 592878 TACCACCTTGATTCGCATATCTGGCTATGTCAT--TATATATTGATAATACTCTCAA-TC 592934 | || |||||||| |||| | | | | | | || | || | ||| ||| || Sbjct 12691 TTCCTCCTTGATTTACATACTTTGTTGTTGCTTCAAATGTTTTAAGCATAGGTACAACTC 12632 Query 592935 CGTTAGATGTACCTTGAGTAGAACTAATATAAGCTCCTTCAACCCGAACATTAGACATAT 592994 || ||| | || ||||| | || || ||||| | | |||||| |||| Sbjct 12631 CGAGTGATCTTCCACCTGTAGATTTTATTGTAGATCCTTTTGCTCTCACATTATGAATAT 12572 Query 592995 TAATACCTATACCTCCCGCAAATTTACTAATAACAGCACAATCTTTC 593041 |||| |||| |||||| ||| |||| |||| |||||| | |||| Sbjct 12571 TAATTCCTAGACCTCCTGCACTTTTAGATATAAGAGCACAGTTTTTC 12525 >seq13 Length=118323 Score = 165 bits (182), Expect = 5e-35 Identities = 244/341 (72%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 297322 GTTTTAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATTCATTATCCTTTT 297381 ||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||| Sbjct 106859 GTTTTAGATTGTTGGTTTGAAAGTGGTTCTATGCCTTATGCACAAAACCATTATCCATTT 106918 Query 297382 GAAAATTCCGA-AATTTTAGACACTTCACAAGATTATATTGCAGATTTTATAACAGAATC 297440 | | || ||| ||| ||| || || |||||||||||| |||| Sbjct 106919 TCCACT---GATAATCTTAAACA--TC-CA----------GCAGATTTTATAGGAGAAGG 106962 Query 297441 AATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTACAGCTATATTTAA 297500 | |||||||||| ||||| |||||||||||||| || ||||||| | ||| || Sbjct 106963 AGTTGATCAAACCAGAGGATGGTTTTATACTTTGCATGTAATTTCTACTCTTTTATACAA 107022 Query 297501 CAAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTTAACGCAGCTGATGGACAAAA 297560 ||||| |||||||||||||| ||||| | |||||||| |||| |||||| | || Sbjct 107023 TAAACCGGCATTTAAAAATGTTATTGTCAATGGAATTGTCTTAGCAGAAGATGGAAAGAA 107082 Query 297561 AAT--GTCAAAAAGTAAAGGTAATTATCCTGATCCAAATATTTTGATGGATAAATATGGT 297618 || || ||| | |||| ||||| || ||||| | || | || | ||||||||| Sbjct 107083 GATGAGTAAAAGATTAAA--AAATTACCCAGATCCTATGGTTGTCGTGAACAAATATGGT 107140 Query 297619 GCAGATACTTTACGTCTTTATTTATTATCAACACCTGTAGT 297659 || ||| | || | | ||| | |||||| | ||||| || Sbjct 107141 GCTGATTCATTGAGATTCTATCTTTTATCATCGCCTGTGGT 107181 >seq224 Length=66361 Score = 163 bits (180), Expect = 2e-34 Identities = 284/406 (70%), Gaps = 9/406 (2%) Strand=Plus/Minus Query 356211 TTGGATAAATCCTTCATATTTAGC-TAATGAAGGCCAAAAACGATGAATTAAATTCATTA 356269 ||| | ||||||| ||||| | ||||||||| || || || || ||||| || | Sbjct 12087 TTGAAGAAATCCTGG-TATTTTGAGTAATGAAGGAAAATAAAAATCAAAGAAATTAATCA 12029 Query 356270 TTAATCCTTTAATATGATATCCATCAACGTCTTGATCTGCTAAAATCATAATACTACCAT 356329 |||||||| ||||| | |||||| |||||||| | | ||| |||||| |||| Sbjct 12028 ACAATCCTTTGATATGGGAACCATCATGATCTTGATCCGTCATAATTATAATATGCCCAT 11969 Query 356330 ACCTAAGTTCTTTAAGATCATTATATACTTTTCCTTGCTCTAAACCAACAAttttttttA 356389 | || | ||||| | ||| || ||| |||| ||||| | ||| || | |||||||| | Sbjct 11968 ATCTTAAATCTTTTACATCTTTGTATTCTTTACCTTGTTTTAATCCTATTATTTTTTTAA 11909 Query 356390 TAGCAGTTATTTCTTCATTACTTGCGACAAT-TGCTGGACTTTTGGTTCT--TACATTTA 356446 || |||| ||| ||| || | | ||| || | | | |||| |||||||| Sbjct 11908 TAT---TTATCAATTCTTTATTTTCCATAATCTGTTTGTGAGAAGCTTCTCGTACATTTA 11852 Query 356447 GTGGTTTTCCTTTTAATGGGAAAATACCATAATAATCTCTTCCGACAACATTTAATCCAG 356506 |||| ||||| || || || | |||||||| |||| |||| |||| | || || | Sbjct 11851 AAAGTTTACCTTTCAAAGGAAATACACCATAATGATCTTTTCCTACAAGACCTATACCTG 11792 Query 356507 ACATAGCAAATGCTTTAGCTGAATCTCCTTCAGTAAGAATTAAAGTACATTTATATCCTT 356566 ||||| |||||| ||||||||||||||||| || | |||||||| ||||| || | Sbjct 11791 ACATAACAAATGTCTTAGCTGAATCTCCTTCTGTTAAAATTAAAGAGCATTTGTAAGAAT 11732 Query 356567 CTTTTGTTCCAGCTTTATGAGCATTATATAATTTCTC-ATATCTAA 356611 | ||||| ||| | | ||||| | ||| || || ||||| || Sbjct 11731 CAACAGTTCCTGCTCTGTTAGCATCTTCTAACTTTTCAATATCCAA 11686 Score = 109 bits (120), Expect = 4e-18 Identities = 278/417 (67%), Gaps = 6/417 (1%) Strand=Plus/Minus Query 357274 TTAATATTTGTTACTTTTGGTTTTTCTTTGTTATACATATTATCAGTAAATTTTTGATAA 357333 || |||||| ||| ||| | ||| | ||| |||||| | |||||| | |||||| Sbjct 11024 TTCATATTTTTTATCACTGGATCTTCCCTCTTACTCATATTCTTTGTAAATCTCTGATAA 10965 Query 357334 AACT-TCTTTCCTCGTTTTGTGTCAACAGTTTCAATATGAAATTCAGTGGAATATATATT 357392 | | | || ||| |||| | || ||||| |||| | |||||| | | ||||| Sbjct 10964 TAATATAATTTCTCCTTTT-TATCTACAGTCTCAACAACAAATTCCTCACTAAAAATATT 10906 Query 357393 AGCTAATTTAGAACCAAAACCATTTTTACCACCCACTGTTTTCTTTTCGTTTTTATCATA 357452 | | ||||| |||| | |||||| | ||||| ||||| || | | |||||| Sbjct 10905 ACAAAGTTTAGCACCATATCCATTTCTTCCACCAGTAACCTTCTTCTCATCATCATCATA 10846 Query 357453 ATTAGTTGATGTCAAAAGTTCTCCAAAAATCATAGATGGTACTAAAATTTTATGCTCTTT 357512 ||||| || || | | |||||||||| || || | ||||| | || | Sbjct 10845 ATTAGAACTGGTTAACAACTGCCCAAAAATCAATTCAGGAACATATATTTTCTCCTTTGC 10786 Query 357513 ATGTTCAACCACATCAATACCATCACCATTATTCCAGACAGTAATCTTACCTGTATCTTG 357572 |||| |||| |||||||| |||||||| | |||| || ||| | | | Sbjct 10785 ATGTATTTTCACAGGTATACCATCTCCATTATTATAAACAGATATGACACCATTCTTCTC 10726 Query 357573 TTCTATATTAACTTTTATTGTATTACATGT--CGAACACCTATTATTATGATCTGCTGCG 357630 || |||| ||||| || ||| ||| | | | | | |||| |||| ||||||||| Sbjct 10725 ATCAATATCCACTTTAATACAATT-CATTTTACTATCTCTTATT-TTATTATCTGCTGCA 10668 Query 357631 TTAACTAATACTTCATCATAAATTTTATATAAACCAGGTACATATGTTATCTCTTTA 357687 ||||| | || ||||||| | ||||||||||||||||| ||| | || || | |||| Sbjct 10667 TTAACAATTATTTCATCAAATATTTTATATAAACCAGGAACAAAAGTAATATTTTTA 10611 >seq257 Length=62978 Score = 131 bits (144), Expect = 1e-24 Identities = 435/665 (65%), Gaps = 34/665 (5%) Strand=Plus/Minus Query 594353 TTGGGTTGTTGAGGAAGTTGATCTTTCTAAAGATGTTTCAGATTGGAATAATTTACTGAG 594412 |||| || ||| ||||| ||| | ||||| ||| | ||||||||| | || | Sbjct 56529 TTGGACTGCTGAAGAAGTAGATTTATCTAATGATTTAGACGATTGGAATGGT---CTTAA 56473 Query 594413 TGAAAATGACAGAATATTTATTATGCATGTACTTGCATTTTTTGCATCAGCAGATGGTAT 594472 ||| |||| ||| ||||| | |||| | |||||||||||| || ||||||| || Sbjct 56472 TGATGATGAAAGACATTTTATAAGTTATGTGTTGGCATTTTTTGCAGCATCAGATGGGAT 56413 Query 594473 TGTAAATGCAAATATAAAAGAAAATTTAATTGATGTTGTTAAAATTAAAGAAGCAGAATG 594532 ||| |||| |||| | ||||||||| | | ||| | || |||||| ||| Sbjct 56412 TGTTAATGAAAATCTTTTAGAAAATTTTGCAGCGGAAGTTCAGATACCAGAAGCTAGATG 56353 Query 594533 TGCATATGGTAAACAATTTGAAATGGAAAATGCACATGGAGAAATGTATTCATTGATGTT 594592 || ||||| ||| | || |||||| |||| || ||||| |||||| | | Sbjct 56352 TGTTTATGGATTCCAAATAATGATAGAAAATATACATTCTGAGATGTACTCATTGCTAAT 56293 Query 594593 AGATACAT---TTGTAAAAGATGATATACTTAAGGATAAATTAATTAAAGCCATAAAAAC 594649 ||| |||| || | || | || | | || ||| ||| |||| || || || Sbjct 56292 AGAAACATATATTAGAGAACAAGAGAAA---AAAGATTTTTTATTTAACGCAATTTCTAC 56236 Query 594650 TATGCCAAGTATTaaaaaaaaaGCAGATTGGTGTAAAAAATGGATTAAATCTGATAAAA- 594708 || |||| |||||||| |||||||| ||| || |||||||| | | ||||||| Sbjct 56235 AATACCAACAATTAAAAATAAAGCAGACTGGACTATGAAATGGAT---AACGGATAAAAA 56179 Query 594709 -----CTTATGC-ACATAAATTAGTTGCATTTGCTATTGTTGAAGGTGTATTTTTTAGTG 594762 || ||| ||| | | || |||||||||| || |||||| | || || || Sbjct 56178 ATCATGTTTTGCTACA-AGAATAATTGCATTTGCGTGCGTAGAAGGTATTTTCTTCTCTG 56120 Query 594763 GATCATTCGCGTCGATATTCTGG-TTAAAAACAAGACAAGGTAATGTTATGCCTGGGTTA 594821 |||| || || || ||||||||| ||||||| || || || | ||||| || | Sbjct 56119 GATCTTTTGCATCCATATTCTGGCTTAAAAA----ACGTGG--AT-TAATGCCAGGTCTT 56067 Query 594822 ATTAAATCAAATAAATTTATTGCACGAGATGAAAATAAACATGTTGAATTAGCA--TCCA 594879 | | || ||| |||| || |||||||| ||||||||||| ||| || Sbjct 56066 ACTTTCTCCAATGAATTAATCAGTAGAGATGAAGGAGTGCATGTTGAATTTGCATGTCTC 56007 Query 594880 TTTTATTTTCACTTTTGAAAAATAG-ACTAAAAGAATCTGTTGTACATGAAATAATAGAT 594938 || || |||||| | ||| || || | | ||| | ||| |||||| | | Sbjct 56006 TTAAATGCTCACTTAGAAGAAAAAGCACCATATGAAAC---AGTAATCGAAATAGTTAAA 55950 Query 594939 GAAGCAATTCAAATTGAAGATGAATTTATTAATGATTCTCTTCCATGCAGATTACTTGGA 594998 |||||| | ||||||| | |||||| || ||| ||| || || ||| ||||| Sbjct 55949 GAAGCAGTAGCAATTGAACAAGAATTTGTTTCTGAAAGTCTACCCGTAAGTTTAATTGGA 55890 Query 594999 ATGAA 595003 ||||| Sbjct 55889 ATGAA 55885 >seq423 Length=9251 Score = 123 bits (136), Expect = 2e-22 Identities = 224/324 (69%), Gaps = 8/324 (2%) Strand=Plus/Minus Query 269153 TTTTATCGCCCACCATTTGTTTTAAACGCTGATAATATGTCGGACCAATAAATATTTTGA 269212 ||||||| | ||||| || |||| | || |||||||| ||||| | ||||||||| Sbjct 8561 TTTTATCTTCTACCATATGCTTTAGTCTTTGGTAATATGTAGGACCTACAAATATTTTTG 8502 Query 269213 CATGCATTTTTTCTCCCGTCATACCATTTGTCATTGTTTCATTTCCCCATGCTTCAT--- 269269 | || | |||| || ||||| ||||| ||| ||| | | | | || || Sbjct 8501 CTTGGAGTTTTCTACCAGTCATTCCATTGTACATAACTTC---TACACCTCTTTTATGGA 8445 Query 269270 ATCCGTATGAAACTAGTTCATCATTTATTTTAT-TAATATCTACACCTGTAAATGGTGTC 269328 |||| || || || || || ||||| || || | | |||| ||| |||||||| Sbjct 8444 ATCCATAGGATTTTAATTTCTCTGATATTTCATCTACTGT-TACATCTGAGAATGGTGTA 8386 Query 269329 GCATCACCATATACTCCTTTAATAGCACATACTTTTCCTAATAGACATTCAATCAATTGT 269388 ||||||| | | |||| | | ||||| |||||||||||||| |||||| || || ||| Sbjct 8385 CCATCACCCTCTTCTCCACTGAGAGCACTTACTTTTCCTAATAAACATTCTATTAAATGT 8326 Query 269389 CCAATGGTCATACGTTTTGGCATACAATTAGGATTAATAATAATATCTGGCACAAGTCCA 269448 ||||||| ||| | | ||| | || || || ||||| | |||||| | | ||| Sbjct 8325 CCAATGGACATTCTTGATGGAAATGCATGTGGGTTCATAATCACATCTGGTATCAATCCT 8266 Query 269449 GATTTAGTAAATGGCATATCTGCT 269472 ||| ||||||||||| ||| || Sbjct 8265 TCTTTGGTAAATGGCATTTCTTCT 8242 >seq394 Length=27021 Score = 107 bits (118), Expect = 1e-17 Identities = 185/269 (69%), Gaps = 15/269 (6%) Strand=Plus/Plus Query 290720 AATAAACCGTCATTAATATTCATTAATGAAATATCTAATGTTCCTGCACCAAAATCGTAT 290779 |||| ||| ||||| | | || | ||||| ||| |||||||| |||| ||||| || Sbjct 14257 AATACACCATCATTTAACTCCAAAATTGAAACATCAAATGTTCCACCACCTAAATCATAC 14316 Query 290780 ATAATAACATTACCTCCATTTTTATTTGTCCAAGTTTTGCTTCCAAGACCATATGTTAAT 290839 | ||| | ||||||||||| || || ||| |||||||| | | Sbjct 14317 ACTGCGACAAT---TCCATTTTTAT----CCTTGT--------CAACACCATATGCCAGT 14361 Query 290840 GAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAA 290899 | || ||||||||||||||||||| | | || || | || || | | |||| ||| Sbjct 14362 GCTGCAGCTGTTGGTTCATTTATAACACGTGCAACCTCTATTCCAGCCACTCTTGCAGAA 14421 Query 290900 TCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTTTT 290959 | | || || || ||||| ||||||| |||||| ||||| |||||||||||||| Sbjct 14422 TTTTTTGTAGCTTGTCGTTGTGCATCATCAAAATATGCAGGTACTGTAATAACAGCCGAA 14481 Query 290960 TCCACTTTCTTTTTCAAATAATTTTCTGC 290988 |||||||| | || | | || |||||| Sbjct 14482 TCCACTTTTCTCTTAAGAAAAGATTCTGC 14510 Score = 102 bits (112), Expect = 5e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || ||||| || || ||||||||| ||||| | ||||| ||||| || ||| || | Sbjct 14477 GCTGTTATTACAGTACCTGCATATTTTGATGATGCACAACGACAAGCTACAAAAAATTCT 14418 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 | |||| | || || | | ||| |||| |||| |||||||||||||| || ||||| Sbjct 14417 GCAAGAGTGGCTGGAATAGAGGTTGCACGTGTTATAAATGAACCAACAGCTGCAGCACTG 14358 Query 474857 GCTTATGGTCTTGATAAGAAT 474877 || |||||| |||| ||| || Sbjct 14357 GCATATGGTGTTGACAAGGAT 14337 >seq334 Length=204185 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 318682 TTAGCATTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAAT 318741 ||| || ||| |||||| |||||| || ||||||| | |||| ||||| |||| Sbjct 181604 TTATCAGATCTAACAGTATGATCATACTCTACTTTAAGACTCTCTAAATGTTTAATTAAT 181545 Query 318742 TTTCTTTGTACATAACCTGTGTC-TGCAGTTTTAATAGCAGTATTAATAATACCTTCTCT 318800 |||||||| ||| || | | ||| ||||||| |||||||| || | ||||||||| Sbjct 181544 GATCTTTGTAAATATCCAGAAACGTGC-GTTTTAACAGCAGTATCCATTAAACCTTCTCT 181486 Query 318801 TCCTGCCATAACTTGGAAAAAGAATTCAGCAGGT 318834 |||||||||| |||||||| |||| || ||| Sbjct 181485 TCCTGCCATACAATGGAAAAAATATTCTGCGGGT 181452 >seq212 Length=67767 Score = 95.1 bits (104), Expect = 8e-14 Identities = 208/309 (67%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 318676 TTATCATTAGCATTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTA 318735 |||| |||| ||||||| ||| ||||||||||| | | | |||||||| | || Sbjct 29310 TTATTATTACCATTTCTAACACTACCATCATATGCAATAGAACAATCTTCTAAACTCTTG 29251 Query 318736 ACTAATTTTCTTTGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCT 318795 || | | ||||||| | ||||| || || | |||||||| | ||||| ||| | ||| Sbjct 29250 ACAAGTCTTCTTTGAATGTAACCAGTTTCAGATGTTTTAATCGAAGTATCAATCAATCCT 29191 Query 318796 TCTCTTCCTGCCATAACTTGGAAAAAGAATTCAGCAGGTCCTAA-ACCTTTAATAAATGA 318854 ||||| ||| |||| |||||||| ||||| |||| ||| || ||| ||| | Sbjct 29190 TCTCTACCTCCCATTGTATGGAAAAATAATTCTTCAGGAATTAATCCCGATAAAAAACTA 29131 Query 318855 ACTTGGACAAAAACCTCTAGCTAAAGCACTGTCATCATGTTGTGCAAACATTGGAAGAGT 318914 || || |||||||||| | || | || |||| || | ||| ||| | || Sbjct 29130 TTTTCTAC-AAAACCTCTACTTTCAGGGCCGTGATCACCTTTAGAAAAATGTGGTAATGT 29072 Query 318915 TCTATTATTAAATCTCTTTTGAATTCTTTTATCTTCGACAATAACTTGACCAATACAACC 318974 | | ||| |||| | ||||||||| |||| ||| | ||| |||| ||| | Sbjct 29071 ACGTTCATTGAATCCAAACGGTATTCTTTTACCTTCAACATTCTGTTGTCCAACACATGC 29012 Query 318975 TGCTATTTG 318983 || || ||| Sbjct 29011 TGTTACTTG 29003 Score = 89.7 bits (98), Expect = 3e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 321684 ATAACAAAATTAGCTCCGGGATATACACGACGCCCATTTTTTACTAATTGTGTGAGATAT 321743 || ||| |||| ||||| ||||| | | | || |||| || |||| | | | | Sbjct 27933 ATTACATAATTTGCTCCAGGATAATTATAAGGACCTCTTTTAACCAATTCTTCTAAAAAA 27874 Query 321744 TCAATATTATGTTCCGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGT 321803 ||||||||| || || ||||| ||||| ||| |||| ||||| | ||| Sbjct 27873 TCAATATTAAAACTAGTTACTCTTTCAGGAAATGAAAGGATTTTAGCAATTTGTTCTGGA 27814 Query 321804 AAACCAACTTCATTCAGTGCAATATTTGGATCAGATGTGATAACTGTACGACCAGACATA 321863 | || ||||||| || ||||||| | ||||| ||| ||||| | | |||| | | Sbjct 27813 ACTCCTACTTCATCAAGCCCAATATTAGAATCAGGTGTAATAACACTTCTTGCAGAAAAA 27754 Query 321864 TCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTTTCC 321910 ||||| | ||||||||||||||| ||||| | | |||||||| || Sbjct 27753 TCAACCCTTTTACCCATAAGATTACCTCTTACTCTTCCTTCTTTACC 27707 >seq235 Length=65598 Score = 93.3 bits (102), Expect = 3e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 480561 AGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCT 480620 || || | |||||||||| |||||| | ||| |||||| | ||||| |||| Sbjct 33340 AGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACTCAATGTTCTACCATCT 33281 Query 480621 TCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCT 480680 || | ||| || || ||||| || | | ||||||||| ||||| ||||||||||||||| Sbjct 33280 TCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGGTATTCCTTCCTTGTCT 33221 Query 480681 TGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTT 480740 || || ||| ||||||| ||| || | || ||| | ||| || || || || Sbjct 33220 TGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGACTTCTAGTGTGATTGTC 33161 Query 480741 TTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || || || || Sbjct 33160 TTGCCCGTAAGCGTTTTGACAAATATCTG 33132 >seq335 Length=48058 Score = 87.8 bits (96), Expect = 1e-11 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 361460 GGTAAATCAATTTTAATATGAATTCCAAATCTTCCTGATCTTTTTACTGCTGGATCTAAT 361519 |||||| || || ||| || | | |||||||||| | |||| || ||| ||||| Sbjct 11022 GGTAAAGGAACTTCAATGTGTAATTCAAATCTTCCAGGTCTTAATAATGCGCTATCTATC 11081 Query 361520 AATTCTAATCTATTTGTTATACCGAT-ACAAATAAAATTATTAAATTGTTCTAAACCATC 361578 || || |||||||| || || || || |||| || | ||||| ||| ||||| |||||| Sbjct 11082 AAATCCAATCTATTGGTCATTCCTATTACAAGTATA-TTATTTAATGATTCTACACCATC 11140 Query 361579 CATTTCTGCTAAAAATTGATTTACAAC 361605 ||||| || | ||||||||||| || Sbjct 11141 CATTTTTGTAAGTAATTGATTTACTAC 11167 >seq57 Length=105065 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 ||||| | ||| |||||||| ||||||||||||| ||||| | | |||| || | Sbjct 88900 CCATCTCTTCCAGCTCTACCACTTTCTTGATAATATCCTTCTACACTTTTTGGAAGAGTA 88841 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||||||||| || |||||| | ||| |||||||| |||||||| ||||| || Sbjct 88840 TAATGTATTACAAATCGTACATCTTTTCTATCTATACCCATACCAAATGCTATTGTAGCT 88781 Query 627889 ACCATTATATT 627899 || || || || Sbjct 88780 ACAATAATTTT 88770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268160369159972