Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq46 242 2e-59 >seq46 Length=107489 Score = 242 bits (268), Expect = 2e-59 Identities = 1117/1739 (64%), Gaps = 90/1739 (5%) Strand=Plus/Minus Query 24651 TTTCTTTTTCTAATGTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACA 24710 ||| ||| |||| |||||||| |||| | | |||| || || ||||||||||||| Sbjct 14083 TTTGTTTGTCTACTGTAAATTTAATAGCCTGCATTACTGGCTTGGTCCTAAGATAATACA 14024 Query 24711 TTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCA-ATG 24769 ||||||| || |||| || || || ||||||||||| || || | || | ||| Sbjct 14023 TTCCAGTCTTTAATTGTTTTTTGTGTCCATAAAAATGCATACTAGTAAGCTGTGAATATG 13964 Query 24770 TTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATCT 24829 | | || ||| ||| | || | ||||| | ||| |||| | || |||||| Sbjct 13963 TGGG-TGTAGCTATAAAAATATTAAGAGATTGTGATTGATCAACATATGGTGTTCTATCA 13905 Query 24830 GCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTT 24889 |||||||| || | || | |||||| || || | |||||| | || | ||| Sbjct 13904 GCAGCTAAATCTAAAATAGATTTCATTTTTAATTCCCATGCTGTTCTATACAAATATTTA 13845 Query 24890 ATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATTTTCTCTCAA----TAGATT 24945 || || |||| ||| | | |||| ||| | || |||| | ||| || ||| || Sbjct 13844 ATTTCTTTTGGTATAGCTTCTATATCTTGGATAGAACCATCGT-TCTGAACTACTAGGTT 13786 Query 24946 CAATCTCATATTCGGTGT-CCAAAGATTAATTTTTTCAAGATCTCTAATCAAGTGTTTAT 25004 | | || ||| | | ||| ||||||| |||| | |||| |||| || | || Sbjct 13785 ---TTTTAT-TTCTTTATTCCAGAGATTAAGTTTTAGTAAATCTTTAATTAAATAAGAAT 13730 Query 25005 TTATGATAATAAATTCTCCAGACAAAACTCTTCT--TATTGATAAGTTTGAAGTGAATGG 25062 ||| | ||| ||||||| ||| |||||| ||| ||| |||||||| || || Sbjct 13729 TTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGTATAAATA--TTTGAAGTTAAAGG 13672 Query 25063 TTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTAT 25122 ||| | |||||||||| || || ||||| || ||||||||||| ||||| | || | Sbjct 13671 TTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGATGCTGTAGGCATAACAGCAAC 13612 Query 25123 TAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAA 25182 |||| |||||||| | |||| || || | || | | || ||||||||||||| Sbjct 13611 AAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTCTCTCAAAATATCCCAATCTAA 13552 Query 25183 ATTATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCTGC 25242 || |||| | | | ||| | ||| | |||||| ||||| | || || || Sbjct 13551 --TAA-ATCTG--TTGGGGTGGTTTT-ATACATATCAAAATGTAATAGACC-CTGACTCA 13499 Query 25243 A-GGCGATTGATCAAAAGTTGAATATTTACC------TTTTGTTATTGCCATATCTTTTG 25295 | || ||| ||| | ||| || |||| || || || | | || ||| Sbjct 13498 ATGGAGATCCCTCATATGTTTCGTAAGTACCATACCGTTCTGCTAATTCAGTAC---TTG 13442 Query 25296 ATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTT 25355 ||| | || |||| |||||| ||| |||| ||||| || ||||| || |||||| Sbjct 13441 ATTCC---AATGCAGAATAATAAATAGTTTCGAAAATTTGCTTATTTAATAATCTAGCTT 13385 Query 25356 TTTCTCCATCGAAAGCAATT--TCCATTAAGGCGAACGTATCTGCTAATCCCTGAACTCC 25413 ||| | ||| || | ||| | | ||| || ||| |||||||| ||||| || Sbjct 13384 CTTCACTATCAAATGGCATTCTTAGAATAATAAATAC--ATCGGCTAATCCTTGAACACC 13327 Query 25414 TAATCCAACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATT 25473 | || | || | |||| | |||||||| | | ||||||| | |||||| | Sbjct 13326 AATACCCATAGGTCTATGTCTCATATTACTTTTTTTAGTTTCTTCTACTGGATATTTTGT 13267 Query 25474 TGTATCGATCACATTATCTAGATTCTTTATGGCAAG--CTTTGTGTATTT-TCTCAACTC 25530 | | || || || |||| | ||| |||| |||| |||| ||| | | | | | Sbjct 13266 TCTGTCTATTACCCTATCCAAATTTTTTA---CAAGAACTTTTACTATCTCTTTTAGTTT 13210 Query 25531 AATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGAT 25590 || || ||||| | ||||| || || ||| || || | | | || Sbjct 13209 TATGAAATCAAATTTG---TTATCTTTAATG-----------AAAGTTGGA-AGACCTAT 13165 Query 25591 TGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCAGAATATTCATTGATCTCGATACA 25650 |||||||||||||||||||||| ||| | | || |||| || || ||| Sbjct 13164 TGATGCTAAATTACAAACAGCTATTTCATCAGGCTTAGTTACTTCAACTATTTCTGCACA 13105 Query 25651 TAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATTATTGCATGTATTGACAA-TAT 25709 | || | |||| || |||| ||| || || ||| || |||| ||| ||| Sbjct 13104 AAGATTAGAACATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATT-ACACGTAT 13046 Query 25710 CTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAA 25769 ||||||| || | || | |||||||| ||||| | | | | || | | ||||| Sbjct 13045 CTTTATAAATTATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGTTTTCCAAA 12986 Query 25770 GTTCTCTCGCTTTTACT-TTCTT--TACGAAGTTACCATCAGAAACAGCTCTTTCGTAAA 25826 | | | |||||||| ||||| | | || || | | || | ||| |||| Sbjct 12985 GATGTTGAGCTTTTACAGTTCTTATTGCCAAT---CCTTTTGCTTCATATTCTTCATAAA 12929 Query 25827 GTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAATAA 25886 ||| ||||| |||| ||| |||||| ||||| | | || | Sbjct 12928 GTTTTACAAACTCTTCATTGTGTTTCTC-------------CCATA---AATCAGG-TGC 12886 Query 25887 TATTTGGACAGAATAAA-TG-CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATC 25944 | | | ||||| ||| || |||||| ||||| || ||| | | ||| |||||||| Sbjct 12885 TGTATCCGCAGAAAAAAGTGACCAATCTTTATTTTCTTCGACTCTTTTCATGAATAAATC 12826 Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTT 26004 ||| | ||| | | | ||||||||||||| | ||| | ||| |||||||| |||||| Sbjct 12825 TGGTACCCAAAGTCCTAAAAATAAATCTCTTGTTCTTACTTCGTCTTTTCCAACATTCTT 12766 Query 26005 TTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACT 26064 | ||| ||||| || ||| | || ||| ||||||||||||| || | || | Sbjct 12765 TCTTAATTCTAAAAATTCATAGATTTCTACATGCCATGGTTCTATGTATACTGCCATTGC 12706 Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 ||| ||| ||| ||| ||||||| ||| || ||| ||| | || ||| ||| || Sbjct 12705 ACCAGGTCTCTTTTTTCCTCCTTGATTTACATACTTTGTTGTTGC-TTCAAATGTTTTAA 12647 Query 26125 -CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| || || | ||| ||| ||| ||| | || | |||||| | | || Sbjct 12646 GCATAGGTACAACTCCGAGTGATCTTCCACCTGTAGATTTTATTGTAGATCCTTTTGCTC 12587 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 | | || ||| || ||| || | || || || | ||| || ||| ||||| | | Sbjct 12586 TCACATTATGAATATTAATTCCTAGACCTCCTGCACTTTTAGATATAAGAGCACAGTTTT 12527 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAG 26303 || |||||||| || |||| ||| ||| |||| || | || | |||||| ||| Sbjct 12526 TCACAGTATCGAATATACCTTCTATAGAATCCTCTTTGATATCCAAAAGAAAACATGAAC 12467 Query 26304 ATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 ||||| || ||||||| |||||||| ||||| ||||| || ||| || ||||| Sbjct 12466 TCAATTGATTATTCTTTGTTCCGGAATTAAACAATGTAGGTGTTGCGTGAATAAAATAT 12408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038646156925