Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq257 259 9e-64 seq301 187 5e-42 seq235 158 2e-33 >seq257 Length=62978 Score = 259 bits (286), Expect = 9e-64 Identities = 523/780 (67%), Gaps = 9/780 (1%) Strand=Plus/Plus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTC-- 49630 ||| ||| ||||| | ||| |||||||||||||||| || || |||| ||| Sbjct 55763 CTTGTAAAGATATATTTTCCATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGA 55822 Query 49631 -TCCTATCAATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATT 49689 ||||| || || ||| | | || || |||||||| | || | |||| ||| Sbjct 55823 ATCCTAG--AT-CAACTAAGAGATTGTCAGCCACAAATTCTATGTAATTACACATAGATT 55879 Query 49690 CACAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctattt 49749 ||| ||||| || | ||| | | |||| ||| || |||||||| ||| ||| Sbjct 55880 TACAGTTCATTCCAATTAAACTTACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTG 55939 Query 49750 ctacagcttgtttaattatcataattatattattttttgataatttatatttaatatgat 49809 |||| |||| ||||| ||| |||| | | | || | ||| | || | ||| Sbjct 55940 CTACTGCTTCTTTAACTATTTCGATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGA- 55998 Query 49810 tcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCAT 49869 |||| || | ||||||||| ||| ||| | || || || ||| || ||||||| Sbjct 55999 --GCATTTAAGAGACATGCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCAT 56056 Query 49870 TACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 | ||||| | |||||||||||||| | ||||||||||| ||||| ||||||||| Sbjct 56057 TGGAGAAAGTAAGACCTGGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAG 56116 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 | ||| ||||| ||||| || || ||||||||||| |||||||||| |||| | Sbjct 56117 ATCCAGAGAAGAAAATACCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATG 56176 Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 |||| | ||| |||||| || |||| ||| |||||||| ||||| || | ||||| Sbjct 56177 ATTTTTTATCCGTTATCCATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTG 56236 Query 50050 TTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTA 50109 | || || |||||||| || ||||| | |||| Sbjct 56237 TAGAAATTGCGTTAAATAAAAAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTA 56296 Query 50110 ATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTC 50169 || || ||||| |||||||||| | ||| || |||||| ||| ||||| || Sbjct 56297 GCAATGAGTACATCTCAGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATC 56356 Query 50170 TTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATAC 50229 | ||||||| ||||||||| | || ||| | | ||| ||| ||||| | Sbjct 56357 TAGCTTCTGGTATCTGAACTTCCGCTGCAAAATTTTCTAAAAGATTTTCATTAACAATCC 56416 Query 50230 CATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTA 50289 |||| |||||||| || ||||| || || || | ||||||||| |||||| ||| || | Sbjct 56417 CATCTGATGCTGCAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAA 56476 Query 50290 AATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATG 50349 | | |||| || | ||| || ||||||||||||||||| |||||||| |||| Sbjct 56477 GACCATTCCAATCGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATG 56536 >seq301 Length=55955 Score = 187 bits (206), Expect = 5e-42 Identities = 184/237 (78%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 192300 TTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATT 192359 |||||| |||||||||| | | |||||||||||| || |||| || || ||||| Sbjct 34935 TTTAAT--TACCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATT 34992 Query 192360 ATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTG 192419 |||||| |||||||| |||| || | ||||| || ||||| || ||||||||||| Sbjct 34993 ATAATCGCTTAATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTG 35052 Query 192420 ATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGA 192479 ||| || ||||||||||||||||| ||||| ||| |||||||| ||||| ||| || Sbjct 35053 ATCTGGAGGTATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGA 35112 Query 192480 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||| |||||||| ||||| || || | ||||||| ||| |||||||| Sbjct 35113 ATTTTCTACTTCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 35169 >seq235 Length=65598 Score = 158 bits (174), Expect = 2e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| | |||| ||||| |||||| |||||| ||||||| |||| ||| Sbjct 33337 ACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACTCAATGTTCTACCATCTTCC 33278 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 ||||||||||| ||||| || ||||| |||||||| || ||||||||||| || |||||| Sbjct 33277 AATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGGTATTCCTTCCTTGTCTTGT 33218 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| ||| || || | ||||| |||||||| || || || || Sbjct 33217 ATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGACTTCTAGTGTGATTGTCTTG 33158 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||||| | ||||||||||||| Sbjct 33157 CCCGTAAGCGTTTTGACAAATATCTGCATT 33128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984474462607650