Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq235 102 5e-17 >seq235 Length=65598 Score = 102 bits (112), Expect = 5e-17 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC- 34806 |||||||||||||| || || |||| |||| || || ||||| || || || || Sbjct 33358 TTTCCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCA 33299 Query 34807 --CGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCT 34864 | || || | |||| |||| ||| || || || || |||| || ||| || ||| Sbjct 33298 CTCAATGTTCTAC---CATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCT 33242 Query 34865 TGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCC 34924 | || | || |||||||| | ||||||| |||||| | |||| || || ||| Sbjct 33241 GGAGGTATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGAT 33182 Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | || || ||||| ||||| || || || ||||| |||||||| Sbjct 33181 TCGACTTCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCAT 33129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691057441741