Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq301 197 2e-45 seq235 129 9e-25 >seq301 Length=55955 Score = 197 bits (218), Expect = 2e-45 Identities = 184/234 (79%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | |||||||||||||||||| |||| |||||| || | Sbjct 35168 TGCAGATCTTTGTTAAAACTCTCACAGGAAAAACAATTACTCTTGAAGTAGAAAATTCTG 35109 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| |||||||||| ||| ||||| ||||||||| || || || ||||||| Sbjct 35108 ATACTATAGAAAATGTAAAGGCTAAGATACAGGATAAAGAAGGAATACCTCCAGATCAAC 35049 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || |||||||| ||||| | || ||| |||||| |||| |||||||||| Sbjct 35048 AGAGATTGATATTTGCAGGAAAACAGCTCGAGGATGGTAGAACATTAAGCGATTATAATA 34989 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 |||| || ||||| || | |||||||||||| |||||||||| ||||| |||| Sbjct 34988 TACAGAAGGAATCTACGTTGCATTTAGTATTAAGATTAAGAGGTGGTAATTAAA 34935 >seq235 Length=65598 Score = 129 bits (142), Expect = 9e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || || ||||| || | || || ||| | || Sbjct 33130 TGCAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCACCG 33189 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | || ||||||| ||| ||||||||| || ||||| || || || ||||||| Sbjct 33190 ACTCCATAGAAAATGTCAAAGCAAAAATACAAGACAAGGAAGGAATACCTCCAGATCAAC 33249 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||||||||||||||| || ||| |||||| || | ||||| |||| Sbjct 33250 AAAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGATTACAATA 33309 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAA 146260 | || |||||||| || | ||||| || | |||| || ||||| || Sbjct 33310 TCCAGAAAGAATCTACACTTCATTTGGTTCTTAGATTGAGGGGAGGAAA 33358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786162085911880