Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq235 168 5e-37 seq301 147 2e-30 >seq235 Length=65598 Score = 168 bits (186), Expect = 5e-37 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 |||||||||||| | || ||||||||||| || |||||||| || || || ||||| | Sbjct 33356 TCCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACT 33297 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 ||||| | | | ||| || | |||||| || ||| ||||||||||||| ||||| || | Sbjct 33296 CAATGTT-CTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAG 33238 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | || || || |||||||||| |||| ||||||| |||||| | ||| | ||| | Sbjct 33237 GTATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGA 33178 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| || || || || ||||| || | ||||| ||||||||||||||| Sbjct 33177 CTTCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATT 33128 >seq301 Length=55955 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGAATCATC 29636 || ||||| | ||| ||||| || || || |||||||| | |||| | | | ||| || Sbjct 34961 ACTAAATGCAACGTAGATTCCTTCTGTATATTATAATCGCTTAATGTT-CTACCATCCTC 35019 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 ||| ||||| || ||| |||||||||| || ||||| || || || || ||||| || || Sbjct 35020 GAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATCTGGAGGTATTCCTTCTTTATCCTG 35079 Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 || || || ||| |||||| ||| |||||| ||||||||||||||| || ||||| Sbjct 35080 TATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTCTACTTCAAGAGTAATTGTTTT 35139 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||||||||||| |||||||| Sbjct 35140 TCCTGTGAGAGTTTTAACAAAGATCTGCAT 35169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217138956899