Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq58 140 4e-28 seq212 89.7 6e-13 >seq58 Length=2400 Score = 140 bits (154), Expect = 4e-28 Identities = 322/480 (67%), Gaps = 19/480 (4%) Strand=Plus/Minus Query 171730 AGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAA 171789 ||| |||||| |||| ||||||| | ||||| |||||||||| ||| |||| | Sbjct 892 AGAGAAGAAGATGATCTAGGTCCTGTATATGGTTTTCAATGGAACCATTTCAATGCTCCA 833 Query 171790 TATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAA---CT 171846 ||| | | ||| | || |||||||||||| |||| || | || ||| |||| | Sbjct 832 TATGTTAATTGTAAAACTGATTACACAGGAAAAGGTGTTAATCAGTTA---CAAAATGCG 776 Query 171847 ATTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATGTA 171906 || ||| | | | || | ||| |||||||| ||| | |||| |||||| Sbjct 775 ATAGATATTATTAAGAAAGATCCAACCAGTAGAAGAATGGTTATTGTCGCATGGAATCCC 716 Query 171907 CCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGTCAGa 171966 ||| | |||||| |||||| || || || |||| |||||||||||| | Sbjct 715 GAACAATTACGGGAAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTC-GC 657 Query 171967 aaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTA 172026 | ||| || ||| ||||| |||||||||||||| | |||| | |||||||| ||| Sbjct 656 TGATAATAAA--TTAAGTTGTCTTTTATATCAAAGATCCGGTGATATGGGATTGGGAGTA 599 Query 172027 CCTTATAATATTGGATTTTATTCATTTTT---AATACTTGTG--TTAAGTAAATGGTGCA 172081 |||| |||||||| ||||||| || | || | ||| |||| | ||| Sbjct 598 CCTTTTAATATTGCTAGTTATTCACTTCTTGCTTTAATGGTGGCAAAAGTTACTGG---- 543 Query 172082 ATTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATG 172141 ||| ||||| | ||||| ||| |||| || |||||||| | ||| ||||| Sbjct 542 -ATTAGAACCAGGTGAATTTATCCATTCTTTAGGTGATGTTCATTTATATGAGAATCACA 484 Query 172142 TTGAACCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATTTA 172201 |||| || |||| ||| | |||||| ||| ||| | || || || ||||||||| Sbjct 483 TTGAGCCAATAAAAAAGCAACTTGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTA 424 >seq212 Length=67767 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 50440 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCT 50499 ||||| |||||||||||||| |||||||||||||||||| | || ||| ||||| | Sbjct 28142 TATAACGCTGATTTTGATGGTGATGAAATGAATTTACATATGCCACAAACATATAATACA 28201 Query 50500 ACTGCTGAATTACAAGAATTAA 50521 | ||||||||||||||||||| Sbjct 28202 AAAGCTGAATTACAAGAATTAA 28223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628527750935040