Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq224 174 1e-37 seq257 167 2e-35 seq394 114 1e-19 seq57 107 1e-17 seq397 102 6e-16 seq212 89.7 4e-12 >seq224 Length=66361 Score = 174 bits (192), Expect = 1e-37 Identities = 245/344 (71%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 400249 GAAAAATTATATAATGCTCACAAAGCAGGAACCAAAGAAGGATATAAATGTACCCTAATT 400308 ||||| ||| | ||||| ||| ||||||||| || || ||||| | ||||| Sbjct 11695 GAAAAGTTAGAAGATGCTAACAGAGCAGGAACTGTTGATTCTTACAAATGCTCTTTAATT 11754 Query 400309 TTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATTGGAAGA 400368 || ||||| |||||||||||||| ||||| | |||||| || | | || | |||| | Sbjct 11755 TTAACAGAAGGAGATTCAGCTAAGACATTTGTTATGTCAGGTATAGGTCTTGTAGGAAAA 11814 Query 400369 GATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCT 400428 ||| ||||||| || || || | | ||| |||||||| ||||| | || ||| || Sbjct 11815 GATCATTATGGTGTATTTCCTTTGAAAGGTAAACTTTTAAATGTACGAGAAGCTTCTCAC 11874 Query 400429 aaaaaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTTGAACAA 400488 ||| | ||| || ||| | ||| | | | || |||||||| | ||| | ||||| Sbjct 11875 AAACAGATTATGGAAAATAAAGAATTGATAAATATTAAAAAAATAATAGGATTAAAACAA 11934 Query 400489 GGAAAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGAT 400548 || |||| || | ||| | |||| |||| ||||||| |||||| ||| | | ||| Sbjct 11935 GGTAAAGAATACAAAGATGTAAAAGATTTAAGATATGGGCATATTATAATTATGACGGAT 11994 Query 400549 CAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTT 400592 |||||| |||||| | ||||||||||||||| | || ||||| Sbjct 11995 CAAGATCATGATGGTTCCCATATCAAAGGATTGTTGATTAATTT 12038 >seq257 Length=62978 Score = 167 bits (184), Expect = 2e-35 Identities = 546/825 (66%), Gaps = 64/825 (8%) Strand=Plus/Plus Query 161002 TTTCTCAAAGAAATTGGCTTTGACAA--AAACGTCGAtttttttCATGTATTCGAATGGA 161059 ||| ||||||||||||| ||| | ||| | || |||| |||| | || |||||| Sbjct 55740 TTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGAT--ATATTTTCCATGAAATCAAATGGA 55797 Query 161060 TTATCAACATTG-AATTTTTTGCGATAACCAAGATCTAC-AAGTAATCTGTCAGCAACAT 161117 || ||| ||| ||| ||| | || | || ||||| || ||| || ||||||| ||| Sbjct 55798 TTTTCAGTGTTGTAATGTTTAGAGA-ATCCTAGATCAACTAAGAGAT-TGTCAGCCACAA 55855 Query 161118 ATTTAATATATTGAGACATTAGTTCAGAATTCATACCAAG-AAGTTTACACGGAAGAGAA 161176 ||| || || | | |||| || | | ||||| |||| || |||| || ||| Sbjct 55856 ATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTTACG-GGTAGACTT 55914 Query 161177 TCATTAATAAATTCTTCTTCAATTTCAATCGCTTCGTCAATAATTTGGTAAACAACAGAT 161236 ||| || |||||||| ||||||| | | ||||| | || |||| | || Sbjct 55915 TCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCGATTAC------- 55967 Query 161237 TCTTTCAAACGAT---TATTCAACAA--TGAATACATAATA--CAAGCAAGTTCTACATG 161289 | ||||| | | | | ||| | | ||| | ||| | || |||| ||| ||||| Sbjct 55968 TGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAGAGACATGCAAATTCAACATG 56027 Query 161290 TTTGTTTTCATCACGAGCAATAAATTGATTTGATATAATTAGACCAGGCATTACATGCAT 161349 |||||| | | || |||| ||| || | | | ||||| ||||||| || || Sbjct 56028 CACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTA-ATCCAC 56086 Query 161350 TTCTCTAGTTTTTAA-CCAGAAAATCGAAGCAAATGATCCACTAAAGAAAACGCCTTCTA 161408 | ||||||| |||||| || || ||||| |||||| ||||||| ||||||| Sbjct 56087 GT------TTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTA 56140 Query 161409 CAATAGAGAATGCTACTAAT-TTGTG----AGCAT-ATGTCTTATCAGATTTAATCCATT 161462 | | ||||| | || | |||| | ||| || | ||||| | | ||||||| Sbjct 56141 CGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTT---ATCCATT 56197 Query 161463 TATTACACCAATCAGCTTTCTTTTTAATACTTGGCATAGTTTTAATAG-----AATTAAT 161517 | || ||| || ||||| |||||||| |||| || || ||| | ||| || Sbjct 56198 TCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAAA 56257 Query 161518 GAGTTTATTTCTCAAAGCATCATCTTTAACAAATGTAGTCAACATTAG---TGAATACAT 161574 | || |||||| | ||| ||| | |||| || | |||| ||| ||||| Sbjct 56258 AATCTTTTTTCTCT-----TGTTCTCTAATATATGTT-TCTA--TTAGCAATGAGTACAT 56309 Query 161575 TTCTCCATGAGCATTTTCCATTGCATA--TTGGAAACCATAAGCACATTCAGCTTCTTTT 161632 || ||| |||||| || ||| |||||| |||||| ||||| ||||||| | Sbjct 56310 CTCAGAATGTATATTTTCTAT--CATTATTTGGAATCCATAAACACATCTAGCTTCTGGT 56367 Query 161633 ATTTTCACAACATCAATAAGATTTTCTTTAATATTAGCATTAACAATACCATCAGCTGCC 161692 || | || | | || ||||||| || ||| |||||||||| ||||| | ||| Sbjct 56368 ATCTGAACTTCCGCTGCAAAATTTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCT 56427 Query 161693 GCAAAAAATGCCAATACGTGCATAATAAAATTTCTATCATCATCGCTCAAATGATTATTC 161752 |||||||||||||| || | | ||||||| ||| |||||||| | | || |||| Sbjct 56428 GCAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATT---AAGACCATTC 56484 Query 161753 CAATCATTCACATCTTTTGCCAAATCCACTTCTTCAACTGTCCAA 161797 ||||| | | ||| || | ||||| ||||||||| | |||||| Sbjct 56485 CAATCGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAA 56529 >seq394 Length=27021 Score = 114 bits (126), Expect = 1e-19 Identities = 196/283 (69%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 |||| || | |||||| ||||| | | ||||| ||||| ||| | |||||| ||| | Sbjct 14201 GATTGTCTATATCTTCGCCTCCTAGCTGTGTATTACCTGATGTACTTTTTACTTCGAATA 14260 Query 282249 GTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA 282308 ||||| | | ||||| | ||||||| ||||||||||| | |||| | | Sbjct 14261 CACCATCATTTAACTCCAAAATTGAAACATCAAATGTTCCACCACCTAAATCATACACTG 14320 Query 282309 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 ||| ||| | || || | || |||| |||||| || | || ||||| |||| Sbjct 14321 CGACA---ATTCCATT---TTTATCCTTGTCAACACCATATGCCAGTGCTGCAGCTGTTG 14374 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 ||||||| |||| | ||| | | ||||| | |||| | | || ||| || |||| Sbjct 14375 GTTCATTTATAACACGTGCAACCTCTATTCCAGCCACTCTTGCAGAATTTTTTGTAGCTT 14434 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| ||||| ||| | |||||||||||| || |||||||| || Sbjct 14435 GTCGTTGTGCATCATCAAAATATGCAGGTACTGTAATAACAGC 14477 >seq57 Length=105065 Score = 107 bits (118), Expect = 1e-17 Identities = 380/581 (65%), Gaps = 31/581 (5%) Strand=Plus/Plus Query 130732 AATTGCCATAGATGAAGCTCATTGTATTAGTGCATACGGATTTGATTTTAGGACTGCTTA 130791 ||||| || |||||||| |||||| | ||| || || ||||||||||| ||| ||| Sbjct 88340 AATTGTGATTGATGAAGCACATTGTGTCAGTCAATGGGGTTTTGATTTTAGACCTGATTA 88399 Query 130792 TAGAGAGATT---ACATTTT-TCAAAGAAATTTTACCCAATGTTCCAATATTAGCATTAA 130847 | | ||| | || | | | |||||| |||| | ||| || |||| |||| Sbjct 88400 TGTCCA-ATTGGCAGATAATCTTAGAGAAAT------CAATATACCAGTAATAGCTTTAA 88452 Query 130848 CTGCGACAGCAACTAATATTGTTGCCAAAGATATTTGTAAGGTTTTGCAATTAAAAACTG 130907 | || || |||| | | ||| | ||||||||| ||| | ||| ||| ||| Sbjct 88453 CAGCCACTGCAAACAGTCGTGTAGAAAAAGATATT-GTAGGATTTCTCAA----AAATCC 88507 Query 130908 ACGAACCCATTAAAGCCTCTTTCGATCGACCTAACTTATATTTAGAGGTACGAATGAAGA 130967 | || | || ||| |||| || || || || | | || ||| || |||| Sbjct 88508 AAAAATCTATAGAAGTAG-TTTCAATAGAAAAAATATAAAATATGAAGTAAGAGAAAAGA 88566 Query 130968 GTAAAAATCCTGCAAATGATATTATTCCAATTATCAATA---AATATCCAAATCAATCC- 131023 |||||| || | ||||| | || |||| ||| | ||||||||| ||| Sbjct 88567 ATAAAAACACTCTTATAAATATTGTATCATTTATAAATGCCTATTATCCAAAT---TCCA 88623 Query 131024 --GTTATTATTTATTGTTTAACCAAGAAAGAGACACAAAAAATAGCTGATATATTGACTG 131081 | ||||||||||||| ||| |||||||| || |||| | |||| |||| | Sbjct 88624 GAGGTATTATTTATTGTACAACAAAGAAAGAATGTGAAGAAATCACAGATAAATTGCAAG 88683 Query 131082 TTCATAAAGTT-GTTTGTGGTATCTATCATGCAGGTTTATCAAACGAACACAAGACAAAA 131140 | ||||| | || ||| | |||||| || |||||| || ||| | || Sbjct 88684 ATTATAAAATCAGTGCAAAATATTT-TCATGCTGGATTATCACCTAAAGACAGAAGGAAT 88742 Query 131141 ACTCATACTAATTTTATCAATAATAAAATAAAAATTGTAGTAGCCACAATAGCATTTGGT 131200 | || | | || || ||| || | |||||| | ||||| ||||||||||||||| Sbjct 88743 ATACA-AGAAGATTGGTC--TAAAAATCTTAAAATTATTGTAGCTACAATAGCATTTGGT 88799 Query 131201 ATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTACGGAGCTCCCAAGAATATT 131260 |||||||| ||| | ||||| || |||| || ||||| ||| || | | | Sbjct 88800 ATGGGTATAGATAGAAAAGATGTACGATTTGTAATACATTATACTCTTCCAAAAAGTGTA 88859 Query 131261 GAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGG 131301 ||||| ||||||||||||| ||||||||| || | ||||| Sbjct 88860 GAAGGATATTATCAAGAAAGTGGTAGAGCTGGAAGAGATGG 88900 >seq397 Length=161998 Score = 102 bits (112), Expect = 6e-16 Identities = 389/601 (65%), Gaps = 15/601 (2%) Strand=Plus/Minus Query 281303 TTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCA 281362 || |||||||||||||| || || |||||| | |||||||| || | ||||| Sbjct 75355 TTTTTATCTGCTTCTTCGTGTTTCTTGGCTTCTTCTACCATTCTCTTAACATCTTCTTCT 75296 Query 281363 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 281422 ||| |||||| | |||| || | || | || | | || |||| || ||| Sbjct 75295 GAGTGTCTTCCTCTCATATTCGTTACTGTTAGATGTTGTGTGTTACTTGTAGAAAGATCC 75236 Query 281423 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 281482 ||| || || ||||| ||||| ||| ||| | ||| || | ||||| ||||| ||| Sbjct 75235 TTGGCTGTTACTTTAAGGATACCGTTGTTATCAATTTCACATTTAACTTCTATTTGTGGG 75176 Query 281483 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 281542 || ||||| | || |||||||| || || ||||| || || | |||||||||| Sbjct 75175 ACTCCTCTTGGTGCTGGTGGGATTCCATCTAAATTGAAACGACCTAATAAATTATTATCT 75116 Query 281543 -TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGA 281601 | |||| || ||| || || |||| || || || | |||||||||||| Sbjct 75115 CCAAATGAA-GATCTTTCTCCTTCACAAATAGAAATTGTTACGGATGGTTGATTATCTGA 75057 Query 281602 ATAAGTTGTAAATACTCTGGATTTTTTA-CAAGGAATTGTTGTGTTTCTATCAATAATAT 281660 || || ||||||||| ||| | || | || || |||| || || ||| Sbjct 75056 GTAGGTAGTAAATACT-TGGGTCTTGGATGTTGGGATGGTTGAACACTTAGGGATCATAG 74998 Query 281661 TGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 || ||| || || || ||||| | | || | ||| || || | |||| || | Sbjct 74997 GTGTTGCAATTCCTCCTGCAGTTTCAATAGAAATTGTAAGTGGGGTTGCGTCAAGAAGTA 74938 Query 281721 CAATATTTTGAAGTTTTTC---ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAG 281777 ||| ||| | | | || |||||| | || | | | ||||||||| ||| | Sbjct 74937 AAATGTTTCCACGATCATCTAAATCAGTATCTCCTTCTAATAAAGCTGCTTGGTAAGCTG 74878 Query 281778 CACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTA---GTTTTTTACCATTGA 281834 | || |||||| ||||||||||| | || || | || | || ||| || || Sbjct 74877 CTCCCAATGCAATTGCTTCATCAGGGTGAAGAGAGTGGTTAATCTTTTGTTTTCC---GA 74821 Query 281835 AAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | || | || ||| |||| | ||||| ||||| | ||| ||||| || |||| |||| Sbjct 74820 AGAATTCTTCTAAG-AGTTCTAAAACCTTTGGAATTCTAGAAGATCCACCTACTACTACA 74762 Query 281894 A 281894 | Sbjct 74761 A 74761 >seq212 Length=67767 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||| || ||||| ||||| ||| | ||||| | ||| |||| | |||||||| Sbjct 29159 GAATTATTTTTCCATACAATGGGAGGTAGAGAAGGATTGATTGATACTTCGATTAAAACA 29218 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 |||| |||||||| |||||||||| ||||||||||| | |||||| | | | Sbjct 29219 TCTGAAACTGGTTACATTCAAAGAAGACTTGTCAAGAGTTTAGAAGATTGTTCTATTGCA 29278 Query 435253 TATGATGGTACAGTGAGAAATG 435274 |||||||||| || ||||||| Sbjct 29279 TATGATGGTAGTGTTAGAAATG 29300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740608846955214