Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_024451.1 Length=220222 Score E Sequences producing significant alignments: (Bits) Value seq58 89.7 7e-13 >seq58 Length=2400 Score = 89.7 bits (98), Expect = 7e-13 Identities = 114/154 (74%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 117826 AAAGAACAAATTTTAAGAAAGCCTAGACCATTCCCAAATCTTAAAATAAAAGAAGGTAAG 117885 ||| | ||| || ||||| ||| |||||||| || ||||| | ||| |||| || Sbjct 472 AAAAAGCAACTTGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTAAA-AAGGAAAA 414 Query 117886 AAA-GACA---TCAATAATTTTGTAATCGAAGATTTTATTTTAGAAAATTATAATCCGCA 117941 | | |||| || | |||||| | | || |||||||| ||||||||||| | || Sbjct 413 ATACGACAGTATCTACGATTTTGAATTTGATGATTTTATACTAGAAAATTATGAAAGTCA 354 Query 117942 TCCGGCTATAAAAATGGATATGGCTGTTTAAGAC 117975 ||| |||||||||||||||||||||||||| || Sbjct 353 TCCAACTATAAAAATGGATATGGCTGTTTAAAAC 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 704578533604080