Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq46 370 1e-97 seq257 318 8e-82 >seq46 Length=107489 Score = 370 bits (410), Expect = 1e-97 Identities = 1018/1539 (66%), Gaps = 42/1539 (3%) Strand=Plus/Minus Query 68688 TAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGT 68747 |||| || ||| | || | ||| || | |||||| || |||| ||| ||| | || Sbjct 13752 TAAATCTTTAATTAAATAAGAATTTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGT 13693 Query 68748 GTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 |||||||| || | ||||| | | |||||||| |||| |||||| | || || Sbjct 13692 ATAAATATTTGAAGTTAAAGGTTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGA 13633 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 ||| || |||||| || || ||||| |||||||| ||||| || ||||||| || Sbjct 13632 TGCTGTAGGCATAACAGCAACAAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTC 13573 Query 68868 TTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAG 68927 | | | | | |||||| | | ||| | ||| || | | ||| | |||| Sbjct 13572 TCTCAAAATATCCCAATCTAATAAATCTGTTGGGGTGGTTTTATACATATCAAAATGTAA 13513 Query 68928 AATTCCGTTACTTGCATATG---ATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGC 68984 | || | ||| || ||| |||| | ||||||||| |||| || | | |||| || Sbjct 13512 TAGACCCTGACT--CA-ATGGAGATCCCTCATATGTTTCGTAAGTACCATACCGTTCTGC 13456 Query 68985 TAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 69044 || |||| ||||| || |||||| |||||||| ||||||||||| | |||||| | Sbjct 13455 TAATTCAGTACTTGATTCCAATGCAGAATAATAAATAGTTTCGAAAATTTGCTTATTTA- 13397 Query 69045 ATCTTGT-GCTTCTAGACTATCGAATGG-ATAATGTAAAAGAATAAATGCATCTGCCAAT 69102 || | | |||||| |||||| ||||| || | || || ||||||| |||| || ||| Sbjct 13396 ATAATCTAGCTTCTTCACTATCAAATGGCATTCT-TAGAATAATAAATACATCGGCTAAT 13338 Query 69103 CCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATA 69162 || ||||| |||||||| ||||||||||||||| |||| ||| || |||| | Sbjct 13337 CCTTGAACACCAATACCCATAGGTCTATGTCTCATATTACTTTTTTTAGTTTCTTCTACT 13278 Query 69163 GGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCC 69222 ||||| | | | ||||| | ||| | |||| || | ||||| || | || Sbjct 13277 GGATATTTTGTTCTGTCTATTACCCTATCCAAATTTTTTACAAGAACTTTTACTATCTCT 13218 Query 69223 TTTAGTTTGAGAAAATCAAATCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCT 69282 |||||||| | ||||||||| |||| ||| || | || ||| |||||| Sbjct 13217 TTTAGTTTTATGAAATCAAATTTGTTATCTTTAATGAAAGTTGGAAGACCTATTGATGCT 13158 Query 69283 AGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 | ||||||||| |||| |||| || || | || | ||| |||| ||| |||||| Sbjct 13157 AAATTACAAACAGCTATTTCATCAGGCTTAGTTACTTCAACTATTTCTGCACAAAGATTA 13098 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402 |||||| |||| || | ||||| ||| ||| | | | ||||| | || || ||| Sbjct 13097 GAACATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATTACACGTATCTTTATAA 13038 Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT- 69461 | || || ||| |||| ||||| || || | ||| || || | |||||||| || | Sbjct 13037 ATTATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGTTTTCCAAA-GATGTTG 12979 Query 69462 AGCATTTATTACGGTCTTGTAACGCTTCTCTTT--TTCATATTGTGTATATAGCCGTTCG 69519 ||| |||| | |||| | | || ||| |||||||| | ||| || | | Sbjct 12978 AGCTTTTA--CAGTTCTTATTGCCAATCCTTTTGCTTCATATTCTTCATAAAGTTTTACA 12921 Query 69520 AA---TTCA-----TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCA 69571 || |||| | || || ||| || |||| | || | | | | | Sbjct 12920 AACTCTTCATTGTGTTTCTCC---CAT-----AAATCAGGTGCTGTATCCGCAGAAAAAA 12869 Query 69572 ATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTA 69631 |||||| | | || || | |||| |||||| |||| ||| || | |||||| ||| Sbjct 12868 GTGACCAATCTTTATTTTCTTCGACTCTTTTCATGAATAAATCTGGTACCCAAAGTCCTA 12809 Query 69632 TAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACT 69691 ||| | |||||| ||||| ||| || ||||| ||| ||| | | || | ||| | Sbjct 12808 AAAATAAATCTCTTGTTCTTACTTCGTCTTTTCCAACATTCTTTCTTAATTCTA-AAAAT 12750 Query 69692 CCATA-ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTT 69750 |||| || || |||||||||||||| |||| ||||| | || |||| || ||| Sbjct 12749 TCATAGATTTCTACATGCCATGGTTCTATGTATACTGCCATTGCACCAGGTCTCTTTTTT 12690 Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| |||| || || | | || | | | | | ||||| || | || || Sbjct 12689 CCTCCTTGATTTACATACTTTGTTGTTGCTTCAAATGTTTTAAGCATAGGTACAACTCCG 12630 Query 69811 TTAGATTTACCATTTGTTCCAGA---AATATAACTTCCTCTTGCGCGAATATTACTAATA 69867 ||| | ||| ||| ||| || | |||| |||| | | |||| |||| Sbjct 12629 AGTGATCTTCCACCTGT---AGATTTTATTGTAGATCCTTTTGCTCTCACATTATGAATA 12573 Query 69868 GATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATAT 69927 | |||| |||||||| ||||||| || |||||||| ||||| || || || Sbjct 12572 TTAATTCCTAGACCTCCTGCACTTTTAGATATAAGAGCACAGTTTTTCACAGTATCGAAT 12513 Query 69928 ATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGT 69987 ||||| ||||| ||| ||| | || | | ||||||||| | || ||||| || Sbjct 12512 ATACCTTCTATAGAATCCTCTTTGATATCCAAAAGAAAACATGAACTCAATTGATTATTC 12453 Query 69988 ATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGA 70047 | ||||| | |||||| |||||||| | ||||||| | || |||||| ||| | | | Sbjct 12452 TTTGTTCCGGAATTAAACAATGTAGGTGTTGCGTGAATAAAATATTTTTTAGACATTAAA 12393 Query 70048 TTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATC 70107 || || || | | || ||||| || | ||||||| ||| || |||||||| Sbjct 12392 TTATACGTCTGTAACGCATCATCTATTTCTTCATCATGAATTTCTAAGGCTACACGCATA 12333 Query 70108 AACATATGCTGAGGTCGTTC-TACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTC 70166 || | || ||| |||| ||| |||| | ||| || |||| |||| || ||| ||| Sbjct 12332 AAAACATCCTGTGGTCTTTCATACC-ATAAATTTTTATTTTTTAACAAATACGATCTTTG 12274 Query 70167 CAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 || |||||| | ||||||||| || | | ||| ||||| Sbjct 12273 CAAAGTTTTCACCCCAAAATAATTTAAAGTAAAATCTCT 12235 >seq257 Length=62978 Score = 318 bits (352), Expect = 8e-82 Identities = 609/887 (69%), Gaps = 23/887 (3%) Strand=Plus/Plus Query 39329 TGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 39388 |||||||| | || | ||| || || ||||| ||||| |||| || |||||||||||| Sbjct 55723 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55782 Query 39389 ATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA-- 39446 ||||||||||| ||||| | || || | ||| ||||||| || || | | Sbjct 55783 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATC--AACTAAGA 55840 Query 39447 -ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 || | || || |||||||||||||| | ||| || ||| |||||||| || | Sbjct 55841 GAT-TGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAA 55899 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT- 39564 | || |||||| || | | ||| |||| ||| || |||| || ||| | | ||| Sbjct 55900 CTTACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATT 55959 Query 39565 -CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATT-AAG---CAG 39619 |||| |||| |||| | | | ||| || | |||| ||| || Sbjct 55960 TCGAT--TACTGTTTCATATGGTGCTTTTTCTTCTAAGTG----AGCATTTAAGAGACAT 56013 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 || || ||| ||| | || ||||||||||| |||||||| || || || || || || Sbjct 56014 GCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCT 56073 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 ||||||| ||||| ||||| ||||| ||||||| |||||||||||||| ||||| || Sbjct 56074 GGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATA 56133 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATC 39796 |||||||| |||||||||| | ||| | ||| || | |||| |||| Sbjct 56134 CCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATC 56193 Query 39797 CACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 39856 || ||| | ||| || ||||| || || | || ||||| || || ||||| Sbjct 56194 CATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAAT 56253 Query 39857 AGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916 | | ||| ||||| || ||| ||| |||||| ||||||| || ||||| || Sbjct 56254 AAAAAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGTACATCTCA 56313 Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 ||||| || ||||| ||| || || ||||| |||| |||||| ||||| | || || Sbjct 56314 GAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGA 56373 Query 39977 ACCTCTG-AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035 || || | |||||| |||| | ||||||||| || || ||||| || ||||| Sbjct 56374 ACTTCCGCTGCAAAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAA 56432 Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATT 40095 ||||||||| |||| | ||||||| | ||||||| | | |||||| || | Sbjct 56433 AAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTC 56492 Query 40096 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 | ||| || |||| ||||||||||||||| ||||||||||| | ||||| || || Sbjct 56493 TAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATA 56552 Query 40156 CATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTAT 40202 | | ||||||| | |||| ||||||||| | ||||||||||| Sbjct 56553 TAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTAT 56599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905030587960