Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq257 288 8e-73 seq58 116 3e-21 >seq257 Length=62978 Score = 288 bits (318), Expect = 8e-73 Identities = 605/891 (68%), Gaps = 22/891 (2%) Strand=Plus/Minus Query 43696 TAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACA 43755 ||| ||||| |||||||||| |||| || |||||| | | || || | |||| Sbjct 56598 TAGATTTGTTTTGTTTCCAATAAAATACGATCGTATATGGGATTTATATAAGCAGGCACT 56539 Query 43756 GGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGC 43815 | || |||||||| || |||||||| ||||| |||| || |||| |||||| || Sbjct 56538 TTCATCGTTTTGGACTGCTGAAGAAGTAGATTTATCTAATGATTTAGACGATTGGAATGG 56479 Query 43816 ATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGA 43875 | || | |||| |||||||||| || || ||||| |||||||| || || Sbjct 56478 TCTTAATGATGATGAAAGACATTTTATAAGTTATGTGTTGGCATTTTTTGCAGCATCAGA 56419 Query 43876 CGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT-GCGCAAGAAGTTCAATTACCAGAAG 43934 ||||| || ||||||||| | |||| ||| || |||||||| ||||||||| Sbjct 56418 TGGGATTGTTAATGAAAATCTT-TTAGAAAATTTTGCAGCGGAAGTTCAGATACCAGAAG 56360 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 | ||||| ||||||| || ||||| ||||||||||| ||||| || |||||| Sbjct 56359 CTAGATGTGTTTATGGATTCCAAATAATGATAGAAAATATACATTCTGAGATGTACTCAT 56300 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAG---AAGCATCGATTGTTTAATGCGA 44051 | || ||||| || || || | ||| || ||| || || || ||||| || | Sbjct 56299 TGCTAATAGAAACATATATTAGAGA---ACAAGAGAAAAAAGATTTTTTATTTAACGCAA 56243 Query 44052 TAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA---ATT 44108 | ||| |||| | |||||| |||||||||||||| | | |||||||||| || Sbjct 56242 TTTCTACAATACCAACAATTAAAAATAAAGCAGACTGGACTATGAAATGGATAACGGATA 56183 Query 44109 CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 ||| | ||||| | || | | || ||||| || ||||| |||||||| | Sbjct 56182 AAAAATCATGTTTTGCTACAAGAATAATTGCATTTGCGTGCGTAGAAGGTATTTTCTTCT 56123 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 | ||||| ||||| ||||||| ||| | || ||||| || || ||||| || | || | Sbjct 56122 CTGGATCTTTTGCATCCATATTCTGGCTTAAAAAACGTGGATTAATGCCAGGTCTTACTT 56063 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTAC 44288 | || ||||| ||||| ||| | |||||||| | ||| || ||||| || | ||| Sbjct 56062 TCTCCAATGAATTAATCAGTAGAGATGAAGGAGTGCATGTTGAATTTGCATGTCTCTTAA 56003 Query 44289 TTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGG 44348 || | ||| ||| | ||| | ||| | | ||| | | || || ||| ||| | Sbjct 56002 ATGCTCACTTAGAAGA--AAAAG-CACCATATGAAACAGTAATCGAAATAGTTAAAGAAG 55946 Query 44349 CAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGA 44408 ||||| || |||||||||||| | | | |||| |||| |||||| ||||||| Sbjct 55945 CAGTAGCAATTGAACAAGAATTTGTTTCTGAAAGTCTACCCGTAAGTTTAATTGGAATGA 55886 Query 44409 A-TGAACTTTTGATGAACCAATATATTGAATACATTGCAG---ATCGTTTACTTTTGGAA 44464 | || | | | ||| | || || |||| | || | ||| ||| || || Sbjct 55885 ACTGTAAATCT-ATGTGTAATTACATAGAATTTGTGGCTGACAATCTCTTAGTT---GAT 55830 Query 44465 CTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCG 44524 || || | | |||||| || | |||| || |||||||| ||||||||||| || Sbjct 55829 CTAGGATTCTCTAAACATTACAACACTGAAAATCCATTTGATTTCATGGAAAATATATCT 55770 Query 44525 TTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGA 44575 || |||| ||||| || || ||||||||| | || | |||||| ||| || Sbjct 55769 TTACAAGGAAAAACCAATTTCTTTGAAAAAAGAGTCGCAGAATACCAGAGA 55719 >seq58 Length=2400 Score = 116 bits (128), Expect = 3e-21 Identities = 308/461 (67%), Gaps = 12/461 (3%) Strand=Plus/Minus Query 40857 AGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAA 40916 || || |||| |||||| |||||||| ||||| ||||| | | ||||| || | Sbjct 892 AGAGAAGAAGATGATCTAGGTCCTGTATATGGTTTTCAATGGAACCATTTCAATGCTCCA 833 Query 40917 TATGACACTATGTACT-CTGATTATACCAATAAAGGAATGGATCAATTACAG--TGCGTT 40973 |||| | | |||| ||||||| || ||||| | |||| ||||| |||| Sbjct 832 TATGTTAAT-TGTAAAACTGATTACACAGGAAAAGGTGTTAATCAGTTACAAAATGCG-- 776 Query 40974 ATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAAT-ATTGTGCGCGTGGAACCC 41032 ||||||| ||||| ||||| || || | || | ||||| ||| ||||| || Sbjct 775 ATAGATATTATTAAGAAAGATCCAACCAGTAGAAGAATGGTTATTGT-CGCATGGAATCC 717 Query 41033 AACGGACG--TACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTT 41090 || || ||| ||||| | ||||| ||||||| |||| ||| ||||| || Sbjct 716 --CGAACAATTACGGGAAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTC 659 Query 41091 TGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTC 41150 || | || | |||| || ||||||||||| ||||| |||||| | || || Sbjct 658 GCTGATAATAAATTAAGTTGTCTTTTATATCAAAGATCCGGTGATATGGGATTGGGAGTA 599 Query 41151 CCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTA 41210 || ||||| || || |||||| | || || | | ||| | ||| | ||||| ||| Sbjct 598 CCTTTTAATATTGCTAGTTATTCACTTCTTGCTTTAATGGTGGCAAAAGTTACTGGATTA 539 Query 41211 AAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAG 41270 |||| ||||||||| | || | ||||| |||| ||| | || |||||||| ||| Sbjct 538 GAACCAGGTGAATTTATCCATTCTTTAGGTGATGTTCATTTATATGAGAATCACATTGAG 479 Query 41271 CCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCC 41311 || ||| | | ||||| | ||| |||| ||||| || Sbjct 478 CCAATAAAAAAGCAACTTGAAAGAACACCTTATCCATTCCC 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453873486195