Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_027916.2 Length=160358 Score E Sequences producing significant alignments: (Bits) Value seq58 116 4e-21 >seq58 Length=2400 Score = 116 bits (128), Expect = 4e-21 Identities = 275/410 (67%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 31156 TCGATGTGATTGACATAAATATGCGCATCGCCAATAGAGTGTACCAATTCCCCTGGTCTT 31215 || |||||||| |||| | ||| |||| || | ||| || | ||||| |||||| | Sbjct 480 TCAATGTGATTCTCATATAAATGAACATCACCTAAAGAATGGATAAATTCACCTGGTTCT 539 Query 31216 AGATGGGTCAATTTGGCAATCACATGAACCAA-AAGCGCATAACTCGCTATGTTGAATGG 31274 | || | ||| || | || | || ||| ||| | |||||| || || || || || Sbjct 540 AATCCAGTAACTTTTGCCACCAT-TAAAGCAAGAAGTGAATAACTAGCAATATTAAAAGG 598 Query 31275 TACACCCAATCCCAAATCGGCAGATCGTTGATATAACAAACAGGAAAGTTCATCTCCGGT 31334 ||| |||||||||| ||| | |||| ||||||||| | ||| | || || | | Sbjct 599 TACTCCCAATCCCATATCACCGGATCTTTGATATAAAAGACAACTTAATTTATTATCAGC 658 Query 31335 CACGTAAAATTGAAATAACACATGACAAGGCGGCAAAGCCATTTCACAGGTATCG-ACGG 31393 || |||||||||||||| |||||| || || | ||||||||| | | || | ||| Sbjct 659 GACATAAAATTGAAATAAACAATGACATGGTGGAAGAGCCATTTC-CCGTAATTGTTCGG 717 Query 31394 GATTCCAAGCGCTTACTAACAAACGCCGACTGGTTGGATCACGCTTAATCTCTTCTATCA 31453 ||||||| ||| | | || | | |||||||||||| |||||| |||||| Sbjct 718 GATTCCATGCGACAATAACCATTCTTCTACTGGTTGGATCTTTCTTAATAATATCTATCG 777 Query 31454 CGGCTGTTATTTGATCGATTCCTTCACCCGTATAATTACTATCACATCCCTTGTAGGCTG 31513 | | || |||| | |||| || || |||| | | | ||| || | | Sbjct 778 CATTTTGTAACTGATTAACACCTTTTCCTGTGTAATCAGTTTTACAATTAACATATGGAG 837 Query 31514 CACCGAAATGTCGCCATTGAAACCCATAAATAGGTCCCAGGTCATGTTCT 31563 || |||||| ||||||||| ||||| | ||| || || |||| |||| Sbjct 838 CATTGAAATGGTTCCATTGAAAACCATATACAGGACCTAGATCATCTTCT 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513014784815920