Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq301 109 5e-19 >seq301 Length=55955 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTC 27094 ||||| ||||| |||||||| || || || ||||| || ||||| | |||| | | || Sbjct 34958 AATACTAAATGCAACGTAGATTCCTTCTGTATATTATAATCGCTTAATGTTCTAC-CATC 35016 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||||||||||| || || | || | | ||||||||| || || | || |||||||| Sbjct 35017 CTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATCTGGAGGTATTCCTTCTTTATC 35076 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||| || | |||||| ||| || | ||| ||||| ||||| || | Sbjct 35077 CTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTCTACTTCAAGAGTAATTGT 35136 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || |||||||| |||||||| |||||| Sbjct 35137 TTTTCCTGTGAGAGTTTTAACAAAGATCTGCATA 35170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932126468168