Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq235 134 3e-26 >seq235 Length=65598 Score = 134 bits (148), Expect = 3e-26 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | || || || |||||||| |||| ||||||||| ||| ||||| || Sbjct 33344 TCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACTCAATGTTCTACC 33285 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || || || || || | || |||||| || || || || |||||||| Sbjct 33284 ATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGGTATTCCTTCCTT 33225 Query 225618 GTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 |||||| || |||||||| ||| ||| |||| ||| | || ||| || |||| |||| Sbjct 33224 GTCTTGTAT-TTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGACTTCTAGTGTGA 33166 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | ||||||||||| | ||||| | || | |||||| Sbjct 33165 TTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATT 33128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192524492384666