Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq235 87.8 1e-12 >seq235 Length=65598 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101009 TTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCG 101068 || || || | |||||| | |||| || | || |||||||| || ||||||||||| Sbjct 33358 TTTCCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCA 33299 Query 101069 GCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACG 101128 || ||| | ||||||||||||||| || ||| |||| | |||||||| ||| Sbjct 33298 CTCAATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGA 33239 Query 101129 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT 101188 || | ||||| ||||| |||||| ||| |||| | | | || ||||| Sbjct 33238 GGTATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCG 33179 Query 101189 GTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||| | || || || |||||||| | ||||| | ||| || |||||| Sbjct 33178 ACTTCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATT 33128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409658608186701