Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq46 392 4e-104 seq257 313 3e-80 >seq46 Length=107489 Score = 392 bits (434), Expect = 4e-104 Identities = 1073/1616 (66%), Gaps = 52/1616 (3%) Strand=Plus/Minus Query 77026 TATTTTGAATGGAACCACCAT-CTGATATAATTGTATTCTTTATATCATCATTCCACAAT 77084 ||| ||| || |||||| | | |||| || | | || ||||| || | |||||| | Sbjct 13822 TATCTTGGATAGAACCATCGTTCTGAACTACTAGGTTT-TTTATTTCTTTATTCCAGAGA 13764 Query 77085 TTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAAT 77144 || | | |||| || ||| | || || ||| || | |||||| ||||||| || Sbjct 13763 TTAAGTTTTAGTAAATCTTTAATTAAATAAGAATTTACAACTTGAAAATCTCCAGCTAAA 13704 Query 77145 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 77204 ||| | || |||||||| || | ||||| | | ||||||| ||||||||| Sbjct 13703 GTTCTTCTGGTATAAATATTTGAAGTTAAAGGTTCTATACATTCATTAAAACCCAAAATT 13644 Query 77205 TGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 77264 || | ||||| || || |||||| || || ||||| |||||| | ||||| || Sbjct 13643 TGGGATGTAGATGCTGTAGGCATAACAGCAACAAATAATGAATTTCTAACTCCATGCTTT 13584 Query 77265 CTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGA 77324 ||||||| ||| | | | | |||||| | | ||||| || | | | | Sbjct 13583 TTGATTTTTTCTCTCAAAATATCCCAATCTAATAAATCTGTTGGGGTGGTTTTATACATA 13524 Query 77325 TCGTATTGTAGAATTCCGTTACTAGCATATG---ATCCATTATATGTTTCATAAGGTCCT 77381 || | |||| | || | ||| || ||| |||| | ||||||||| |||| || Sbjct 13523 TCAAAATGTAATAGACCCTGACT--CA-ATGGAGATCCCTCATATGTTTCGTAAGTACCA 13467 Query 77382 TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATC 77441 | ||| |||| |||| ||| | ||||||||| |||||||| ||||||||||| Sbjct 13466 TACCGTTCTGCTAATTCAGTACTTGATTCCAATGCAGAATAATAAATAGTTTCGAAAATT 13407 Query 77442 TTCTTATTGAGATCTTGT-GCTTCAATACTATCAAACGG-ATAATGTAAAAGAATAAAGG 77499 | |||||| | || | | ||||| ||||||||| || || | || || |||||| Sbjct 13406 TGCTTATTTA-ATAATCTAGCTTCTTCACTATCAAATGGCATTCT-TAGAATAATAAATA 13349 Query 77500 CATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAG 77559 |||| |||||||| ||||| |||||||| ||||||||||||||| |||| |||||| Sbjct 13348 CATCGGCTAATCCTTGAACACCAATACCCATAGGTCTATGTCTCATATTACTTTTTTTAG 13289 Query 77560 CTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTT 77619 |||| | ||||| | | ||||||| | ||| | |||| | |||| |||| Sbjct 13288 TTTCTTCTACTGGATATTTTGTTCTGTCTATTACCCTATCCAAATTTTTTACAAGAACTT 13229 Query 77620 TAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTATAACAAACATGTTCAAAG 77679 | || | || |||||||| | ||||||||| | |||| ||| | | ||| ||| Sbjct 13228 TTACTATCTCTTTTAGTTTTATGAAATCAAATTTGTTATCTTTAATGA--AAGTTGGAAG 13171 Query 77680 --CTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTC 77737 |||| ||||||| ||||||||| |||| |||| || || | || | ||| || Sbjct 13170 ACCTATTGATGCTAAATTACAAACAGCTATTTCATCAGGCTTAGTTACTTCAACTATTTC 13111 Query 77738 GGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA 77797 | ||| |||||| |||||| |||| || | ||||| ||||| | | |||| || Sbjct 13110 TGCACAAAGATTAGAACATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATTACA 13051 Query 77798 TGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTT 77857 | || ||||||| || || ||| | || ||||| || |||| ||| || || | ||| Sbjct 13050 CGTATCTTTATAAATTATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGTTTT 12991 Query 77858 CCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCC--TC--TCTCTTTCATATTGAG 77913 ||| | | |||||||| || || ||| ||| || | | |||||||| Sbjct 12990 CCAAAGATGTTGAGCTTTTA-CA---GTTCTTATTGCCAATCCTTTTGCTTCATATTCTT 12935 Query 77914 TATATAGCCGTTCAAA---TTCA-----TCTCCCCAAACATCATCCAATCCAGGGCATTC 77965 ||| || | |||| |||| | || || ||| || |||| | Sbjct 12934 CATAAAGTTTTACAAACTCTTCATTGTGTTTCTCC---CAT-----AAATCAGGTGCTGT 12883 Query 77966 ATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGG 78025 || | | | | |||||| || || ||| | |||| |||||| || | ||| || Sbjct 12882 ATCCGCAGAAAAAAGTGACCAATCTTTATTTTCTTCGACTCTTTTCATGAATAAATCTGG 12823 Query 78026 TATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTT 78085 || ||| || | | ||||| ||||| ||||| ||| || ||||| ||||||| | Sbjct 12822 TACCCAAAGTCCTAAAAATAAATCTCTTGTTCTTACTTCGTCTTTTCCAACATTCTTTCT 12763 Query 78086 AAGATCGAGAAACTCCATA-ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTC 78144 | || | ||| | |||| || || |||||||||||||| |||| |||||| | | Sbjct 12762 TAATTCTA-AAAATTCATAGATTTCTACATGCCATGGTTCTATGTATACTGCCATTGCAC 12704 Query 78145 CAGGTCGTTTATTACCTCCCTGATCTATATA-TCTGGCGGTGTTATTATAAACTCTCAAC 78203 |||||| || || ||||| |||| || ||| | || | || | | | | | | | | Sbjct 12703 CAGGTCTCTTTTTTCCTCCTTGATTTACATACTTTGTTGTTGCT-TCAAATGTTTTAAGC 12645 Query 78204 ATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGA---AATATAACTTCCACTTGCG 78260 || || | || ||| ||| ||||| ||| ||| || | ||| |||| Sbjct 12644 ATAGGTACAACTCCGAGTGATCTTCCACCTGT---AGATTTTATTGTAGATCCTTTTGCT 12588 Query 78261 CGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT 78320 | | |||| ||| || |||| |||||||| | |||||||| ||||| || | Sbjct 12587 CTCACATTATGAATATTAATTCCTAGACCTCCTGCACTTTTAGATATAAGAGCACAGTTT 12528 Query 78321 TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 |||| |||||| | ||||| |||||| || || | || | | ||||||||| | Sbjct 12527 TTCACAGTATCGAATATACCTTCTATAGAATCCTCTTTGATATCCAAAAGAAAACATGAA 12468 Query 78381 GACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCAT 78440 || ||||| || ||||| | |||||| ||||| || | ||| || |||| || Sbjct 12467 CTCAATTGATTATTCTTTGTTCCGGAATTAAACAATGTAGGTGTTGCGTGAATAAAATAT 12408 Query 78441 TTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCT 78500 |||| ||| | || ||| || || | | || ||||| || | ||||||| || Sbjct 12407 TTTTTAGACATTAAATTATACGTCTGTAACGCATCATCTATTTCTTCATCATGAATTTCT 12348 Query 78501 ACCGCTACACGCATCAACATATGCTGAGGTCTTTCA-ACCGTCTTATTATTTATTTTCAA 78559 | ||||||||||| || | || ||| ||||||||| ||| | ||| || |||| || Sbjct 12347 AAGGCTACACGCATAAAAACATCCTGTGGTCTTTCATACCAT-AAATTTTTATTTTTTAA 12289 Query 78560 CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCT 78615 ||| || ||| ||| ||||||||| | |||||||| || | | ||| ||||||| Sbjct 12288 CAAATACGATCTTTGCAAAGTTTTCACCCCAAAATAATTTAAAGTAAAATCTCTCT 12233 >seq257 Length=62978 Score = 313 bits (346), Expect = 3e-80 Identities = 614/892 (69%), Gaps = 33/892 (4%) Strand=Plus/Plus Query 47853 TGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 47912 || ||||| | || | ||| || || ||||| ||||| |||| || |||||||||||| Sbjct 55723 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55782 Query 47913 ATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGT 47972 || |||||||||||||| | | || ||| ||| ||||||| || | || Sbjct 55783 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGA 55842 Query 47973 CTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 48032 | || || || |||||||| || | ||| || ||| |||||||| || | | Sbjct 55843 TTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTT 55902 Query 48033 ACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC---ACTATTATC 48089 || |||||| || | || ||| |||||||| || | || || || |||||| || Sbjct 55903 ACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATT-TC 55961 Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATA--CAACAAATGTTTAAACATTAAA----CAT 48143 ||| ||| ||||| | ||||| | | | || | | |||| || ||| Sbjct 55962 GAT--TACTGTTTCATA---TGGTGCTTTTTCTTCTAAG---TGAGCATTTAAGAGACAT 56013 Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203 ||||| ||| ||| | |||||||||||||| |||||||| || || || || ||||| Sbjct 56014 GCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCT 56073 Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATG 48263 ||||||| |||||||||||| ||||| ||||| | || ||||||||||| ||||| || Sbjct 56074 GGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATA 56133 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG---TATC 48320 ||||||||| ||||||||| | | ||| | ||| | || || | |||| Sbjct 56134 CCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATC 56193 Query 48321 CAC--CGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 || | | || ||| || || || || || | || ||||| || || |||| Sbjct 56194 CATTTCATAGT--CCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAA 56251 Query 48379 AGAGAAAGt-ttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATACA 48435 | | ||| | ||||||| | | ||| ||| || || ||||||| || || || || Sbjct 56252 ATAAAAAATCTTTTTTCTCTTGT-TCTCTAATATATGTTTCTATTAGCAATGAGTA--CA 56308 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | || || || |||||||| || || || ||||| |||| |||||| ||||||| | Sbjct 56309 TCTCAGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTA 56368 Query 48496 TCTGTACCTCCG-TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 |||| || |||| | |||||| ||| | ||| ||||| || || ||||| || Sbjct 56369 TCTGAACTTCCGCTGCAAAATT-TTCTAAAAGATTTTCATTAACAATCCCATCTGATGCT 56427 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 ||||||||||| || |||| | ||||||| | |||| | | | || |||||| Sbjct 56428 GCAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAA 56487 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 || | | ||| || |||| ||||||||||||||| |||||||| |||| ||| | Sbjct 56488 TCGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGC 56547 Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTAT 48726 ||||| | || ||||||| | ||||| ||||| || | ||||||||||| Sbjct 56548 TTATATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTAT 56599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664988004960