Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq235 114 3e-20 seq301 107 4e-18 >seq235 Length=65598 Score = 114 bits (126), Expect = 3e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| | ||| || || | |||||| ||||| ||||| ||||| |||||||| || || Sbjct 33350 CCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACTCAATGT 33291 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||| |||||||| | ||| || || || || | || || || || | | ||||| Sbjct 33290 TCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGGTATTCC 33231 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| ||||| |||||| ||||||| | |||| | ||| | || ||||| || Sbjct 33230 TTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGACTTCTAG 33171 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || |||||||| || || || || || | ||||||| Sbjct 33170 TGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATT 33128 >seq301 Length=55955 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || || || || || |||||| ||| ||||| ||||| || || ||| || Sbjct 34973 GTAGATTCCTTCTGTATATTATAATCGCTTAATGTTCTACCATCCTCGAGCTGTTTTCCT 35032 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | ||||| || || | | |||||||| || || || || || || Sbjct 35033 GCAAATATCAATCTCTGTTGATCTGGAGGTATTCCTTCTTTATCCTGTATCTTAGCCTTT 35092 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | |||| | || ||| | ||||||||||||||||| ||||| || |||||||| Sbjct 35093 ACATTTTCTATAGTATCAGAATTTTCTACTTCAAGAGTAATTGTTTTTCCTGTGAGAGTT 35152 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| |||||| Sbjct 35153 TTAACAAAGATCTGCAT 35169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153814310118569