Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq423 96.9 5e-15 seq335 95.1 2e-14 >seq423 Length=9251 Score = 96.9 bits (106), Expect = 5e-15 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 63721 AAAATAAAATTAAGATCTTCTAAAATACCAGAAATAGGTGATAAATTTGCTTCTTTTACA 63780 ||||||||| || |||| | | |||||| ||||||| |||||||||||||| | ||| Sbjct 8147 AAAATAAAAGTACGATCATGCAGAATACCTCAAATAGGAGATAAATTTGCTTC-TCGACA 8205 Query 63781 -GCTCAAAAAGGTACGTGTGGTATGATTTATCGACAAGAAGATATGCCTTTTACCAAAGA 63839 | || |||||||| || |||| | |||||||||| ||||| ||||||||||| Sbjct 8206 TGGACAGAAAGGTACCATAGGAATGACATTAAGACAAGAAGAAATGCCATTTACCAAAGA 8265 Query 63840 CGGTATCGTACCCGATCTCGTCATCAATCCACACGCTTTTCC 63881 || | |||| ||| | | || || ||||| || ||||| Sbjct 8266 AGGATTGATACCAGATGTGATTATGAACCCACATGCATTTCC 8307 >seq335 Length=48058 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 155895 TCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCG 155954 ||||| ||||| || ||| || | ||||| || | ||||||||||||||||| Sbjct 11016 TCATCTGGTAAAGGAACTTCAATGTGTAATTCAAATCTTCCAGGTCTTAATAATGCGCTA 11075 Query 155955 TCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACA 156014 || || || || ||| |||||||| ||||| | | || || ||||| ||||||||| Sbjct 11076 TCTATCAAATCCAATCTATTGGTCATTCCTATTACAAGTATATTATTTAATGATTCTACA 11135 Query 156015 CCGTCTATTTTAGACAATAATTGATTGACTAC 156046 || || ||||| | | ||||||||| ||||| Sbjct 11136 CCATCCATTTTTGTAAGTAATTGATTTACTAC 11167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667071539424840