Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq168 149 1e-30 >seq168 Length=41216 Score = 149 bits (164), Expect = 1e-30 Identities = 410/624 (66%), Gaps = 17/624 (3%) Strand=Plus/Minus Query 281682 TACTTCAGAAGGTTATCATCTGTATCGACGAAAACCTGTCGCGTCTTAGGGTT--CAGTT 281739 || || |||||| |||||| | || ||||| | || |||| | | | | ||| | Sbjct 23766 TAGTTTAGAAGGGCATCATCGCTCTCCACGAATATCTT--GCGTGTGATGCTCGCCAGGT 23709 Query 281740 TCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACT 281799 | |||||||| || | ||| |||| || || || |||||||| | || || |||| Sbjct 23708 TGGTGAAGATGTAACGCGCAGACGCGGCATCCTTGCCGCCCTGCAGGCGCGTGCCGAACT 23649 Query 281800 GACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGA 281859 | ||||| |||| | | ||| ||||| ||||| || ||| |||| || || || |||| Sbjct 23648 GCCCCTCAGGCATGAGCAGGTTGATGTTGTTGCTGCCCACGAAATCGTGTGCAAGTTTGA 23589 Query 281860 CGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAAC 281919 ||| ||| ||| || |||||| ||||| || || || ||| |||||||| || | Sbjct 23588 TGATCGTCTGCTGCAGACTTACCTCGCCGTGATGGTACGCCGAGTGCTCGGCAACGTAGC 23529 Query 281920 CACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAATATAATA 281979 | | |||||| ||||| | |||||| | | ||| | || ||| ||| || | | Sbjct 23528 CCACAAGCTGTGCAACCTTAATCTCTGATTTAAGGTTCCTCTTAAAACAGCAGTACATCA 23469 Query 281980 CTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGTCAT 282039 | || || || ||||| || || || || || || || |||||||| | ||| Sbjct 23468 CCTTCCGCTGTCCCGGCTTAAACCCGTCCACAACGGAGGGTATGCTGCGAACGTTGTCCG 23409 Query 282040 ACCGCGAGAACAAAATAAGTTCCTTGTCAATGAAGT-CGGGAACGGGAACCTCGGGCTTC 282098 | ||||||||||| || || |||| ||||||| | || ||| | | || | Sbjct 23408 CCATAGAGAACAAAATCAGCTCTTTGTTGATGAAGTCCCTGATCGGTATTTTGTGGGCGC 23349 Query 282099 TTGTGGTCAAGTTGGTTTCCCGGCTCGTATGCCGTCATCCACTCCTTGCGATCCTCGGCC 282158 |||| ||||| | || ||| || | | | | |||| ||| | || |||||| Sbjct 23348 -TGTGATCAAGAAAAGTGCCGGGCACGCAGTTCTTAAGCCACAGCTTTCTGTCATCGGCC 23290 Query 282159 CGAGTCTTGTTGAAAGAACGATCGATGAGC-------TCTCCAGAATCAGAAGTCCACGT 282211 |||||||||| | | ||||| ||| |||| | || || ||| Sbjct 23289 TTCTTCTTGTTGAACGCCAGGTCGATCAGCGACTGGTCCTCCGTCGTGAGCAG----CGT 23234 Query 282212 AAACGTCTTCATAAGAGTCTTCAGGTTGCTGAAGTAATGCTTGGCATCAGTGCTGGAACT 282271 ||||| || | | | | ||| ||||||||||| ||||||||||| | | || Sbjct 23233 AAACGATTTGACGTGCTTTTCCAGATTGCTGAAGTACTGCTTGGCATCCTTTGACGTGCT 23174 Query 282272 CGTACCGAGACCCTTGTAATACTT 282295 ||| || || |||||||| ||||| Sbjct 23173 CGTGCCCAGTCCCTTGTAGTACTT 23150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819798455300