Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq242 129 7e-25 >seq242 Length=24773 Score = 129 bits (142), Expect = 7e-25 Identities = 350/528 (66%), Gaps = 11/528 (2%) Strand=Plus/Minus Query 24171 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 24230 || || |||||||||||||| || |||||||| || ||||| || || ||||| || ||| Sbjct 12140 ATCAACTCGTTGGAAAACGTAAGACCGGGCATAAGACCACGTTTCTTCAGCCAGAAGATG 12081 Query 24231 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAA---GTCTT 24287 ||||| || ||||| ||||| | ||| || || |||||| ||||||| | || Sbjct 12080 GACGCGAACGATCCGCTGAAGAACAGTCCCTCCACACACGCAAACGCAATAACACGCGTT 12021 Query 24288 TCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGC-CCAATCGGCCTTCTTTTTTAC 24346 | || | | | |||| | |||||| ||| ||| ||| || |||||| | || || Sbjct 12020 GCAAAATCAGAGTCCTTGTCGTTTATCCA-TTTAAAGCACCACTCCGCCTTCCTCTTCAC 11962 Query 24347 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATA 24406 || | | || ||||| || || ||| ||| || | || || | ||| Sbjct 11961 CGTGTTTATGTTAGCAATCGCATTGAACAGGAAGTCTTTCTCCTCCTGGTCCTTGATATA 11902 Query 24407 TGTATCAATCAAAAGACTA-TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATC 24465 || ||||||| | || | |||||||| || | ||| ||||| || || || | Sbjct 11901 CGTGTCAATCAGCA-ACGAGTACATTTCGCTGTGCACGTTCTCAATCATAATCTGGAAGC 11843 Query 24466 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGC--TAAATT 24523 ||||||| || | ||||| ||| |||||| || | || ||||| | | || Sbjct 11842 CGTAGAAGCAGCGCGCCTCCTTAAGCTGTACCTCACGTGAGAA--GTTCTCCAGCAGGTT 11785 Query 24524 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 24583 ||| || || || ||||| ||||| || ||||| | || | ||| |||| Sbjct 11784 TTCGTTTACAATGCCGTCCGATGCTGCGAAGAACGCAAGAACGTACGATATGAAATGGCG 11725 Query 24584 TTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCAC 24643 || || | || | ||||| |||| || ||||| || | ||| || ||||| || Sbjct 11724 CTCATCACAGTTCAGCCTGTTCCAGTCATCAATGTCTTTGGACAGATCAACCTCTTCAAC 11665 Query 24644 TGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 |||||| ||||||| | ||||| || ||||| | ||| | ||| || Sbjct 11664 TGTCCAGAATGATGACAGTGCCTGCTTGTACATCTGCCATACGTCCTG 11617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719299328800