Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq242 152 5e-32 seq303 122 9e-23 >seq242 Length=24773 Score = 152 bits (168), Expect = 5e-32 Identities = 207/289 (72%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 116628 ACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGG 116687 ||| |||| | |||| |||||||| |||| | | || |||||||| || || |||| Sbjct 11615 ACCAGGACGTATGGCAGATGTACAAGCAGGCACTGTCATCATTCTGGACAGTTGAAGAGG 11674 Query 116688 TGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCA 116747 | || |||||||| |||| |||||| | | ||||| | ||||||||||||| Sbjct 11675 TTGATCTGTCCAAAGACATTGATGACTGGAACAGGCTGAACTGTGATGAGCGCCATTTCA 11734 Query 116748 TCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCG 116807 | | |||| || || || ||||| || |||||||| || ||||| || ||| | | Sbjct 11735 TATCGTACGTTCTTGCGTTCTTCGCAGCATCGGACGGCATTGTAAACGAAAACCTGCTGG 11794 Query 116808 AGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCG 116867 || ||| | | ||||| ||| | |||||||| |||||||||||||| ||||| Sbjct 11795 AGAACTTCTCACGTGAGGTACAGCTTAAGGAGGCGCGCTGCTTCTACGGCTTCCAGATTA 11854 Query 116868 CCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 || |||||||||||| |||||||| ||| || || |||||||| Sbjct 11855 TGATTGAGAACGTGCACAGCGAAATGTACTCGTTGCTGATTGACACGTA 11903 >seq303 Length=146937 Score = 122 bits (134), Expect = 9e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||||||||||||||| || ||||| |||||||| || || |||| || ||| | Sbjct 97630 AAATGCAAATATTCGTAAAGACACTCACAGGCAAAACAATTACGCTCGAGGTGGAATCGT 97571 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||||| | ||| | |||| || || | ||||| ||||| || || | || | Sbjct 97570 CCGACACAATCGAAAATGTAAAGGCGAAGATACAGGACAAGGAGGGGATACCGCCCGATC 97511 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| ||||| | || || || ||||| || || | || || || | |||||| | Sbjct 97510 AGCAACGGCTCATATTTGCTGGGAAGCAGCTTGAGGATGGACGGACACTGAGCGACTATA 97451 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||| ||||||||| |||||||| Sbjct 97450 ACATACAGAAGGAGAGTACGCTGCA 97426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217203525600