Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq155 125 6e-24 seq303 116 3e-21 >seq155 Length=106166 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | ||||||| ||| ||||| | ||| ||| || || | ||||||||| || Sbjct 85249 CCTCCTCTCAATCTCAGCACTAAGTGCAACGTACTCTCCTTCTGCACGTTGTAATCACTA 85308 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| |||||||| || ||||| |||| || || ||||||||||||||| Sbjct 85309 AGAGTACGTCCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCGTTGCTGATCGGGAGGT 85368 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| |||||| ||| || | | ||||| | ||| ||| Sbjct 85369 ATGCCCTCCTTGTCCTGAATTTTACTTTTCACGTCGCATATCGTGTCTGAAGGCTCTACC 85428 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || ||||| || || || |||||||| || ||||| Sbjct 85429 TCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTTACAAAGATTTGCAT 85475 >seq303 Length=146937 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||| ||| || || ||||| || ||||||| || || |||||| Sbjct 97419 CACCAAGTGCAGCGTACTCTCCTTCTGTATGTTATAGTCGCTCAGTGTCCGTCCATCCTC 97478 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTG 118647 ||||| || ||||| | ||||| || ||||||||||| ||||| |||||||||| ||| Sbjct 97479 AAGCTGCTTCCCAGCAAATATGAGCCGTTGCTGATCGGGCGGTATCCCCTCCTTGTCCTG 97538 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 | || || || || | ||||| ||||| | || ||||||| || | |||| Sbjct 97539 T-ATCTTCGCCTTTACATTTTCGATTGTGTCGGACGATTCCACCTCGAGCGTAATTGTTT 97597 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || || ||||| || || ||||| Sbjct 97598 TGCCTGTGAGTGTCTTTACGAATATTTGCAT 97628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828760934520