Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq155 116 3e-21 seq303 104 2e-17 >seq155 Length=106166 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||||||| | || ||||||| ||| ||||||||||| | |||||| || | Sbjct 85249 CCTCCTCTCAATCTCAGCACTAAGTGCAACGTACTCTCCTTCTGCACGTTGTAATCACTA 85308 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || || || || || || || || || | ||| || || |||||||| Sbjct 85309 AGAGTACGTCCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCGTTGCTGATCGGGAGGT 85368 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGC-CACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| |||||| || | || ||| | |||| | ||| || Sbjct 85369 ATGCCCTCCTTGTCCTGAATTTTACTTTTCA-CGTCGCATATCGTGTCTGAAGGCTCTAC 85427 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | || || ||||||||||| || ||||| |||||||||||||| Sbjct 85428 CTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTTACAAAGATTTGCAT 85475 >seq303 Length=146937 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||| | || | |||||||||||||| ||||||||||| ||||| |||||| || Sbjct 97402 CCTCCTCTAAGCCTGAGCACCAAGTGCAGCGTACTCTCCTTCTGTATGTTATAGTCGCTC 97461 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| || | || || || || || || || ||||| | ||| || || ||||| || Sbjct 97462 AGTGTCCGTCCATCCTCAAGCTGCTTCCCAGCAAATATGAGCCGTTGCTGATCGGGCGGT 97521 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | |||| |||||| Sbjct 97522 ATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTTTCGATTGTGTCGGACGATTCCACC 97581 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 || | ||||| || ||||| || || ||||| || || |||||||| |||| Sbjct 97582 TCGAGCGTAATTGTTTTGCCTGTGAGTGTCTTTACGAATATTTGCAT-TTGC 97632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073707356510