Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq242 181 9e-41 seq303 125 6e-24 >seq242 Length=24773 Score = 181 bits (200), Expect = 9e-41 Identities = 552/852 (65%), Gaps = 6/852 (1%) Strand=Plus/Plus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||| | ||| | |||||||| ||||| |||| || ||||| || ||||| || || Sbjct 11620 GACGTATGGCAGATGTACAAGCAGGCACTGTCATCATTCTGGACAGTTGAAGAGGTTGAT 11679 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||||| || || | || ||| | || || |||| | |||| || Sbjct 11680 CTGTCCAAAGACATTGATGACTGGAACAGGCTGAACTGTGATGAGCGCCATTTCATATCG 11739 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||| | ||||| ||||| ||||| || || ||||| ||||| || || | || | Sbjct 11740 TACGTTCTTGCGTTCTTCGCAGCATCGGACGGCATTGTAAACGAAAACCTGCTGGAGAAC 11799 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || |||| || || || | | ||||||| | ||||| ||||| || || | ||| Sbjct 11800 TTCTCACGTGAGGTACAGCTTAAGGAGGCGCGCTGCTTCTACGGCTTCCAGATTATGATT 11859 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || |||||||| |||||||| ||| | || || || ||||| | |||||| | || Sbjct 11860 GAGAACGTGCACAGCGAAATGTACTCGTTGCTGATTGACACGTATATCAAGGACCAGGAG 11919 Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAG 57926 |||||| |||||||| ||||| | | || | || | | |||||| ||| Sbjct 11920 GAGAAAGACTTCCTGTTCAATGCGATTGCTAACATAAACACGGTGAAGAGGAAGGCGGAG 11979 Query 57927 TGGTCAATCAAATGGATAAAAAGCGCCACGGCCAC---GTTCGCCGAGAGGCTAATCGCG 57983 |||| | ||||||||||| || || || | | || || | | | || ||| Sbjct 11980 TGGTGCTTTAAATGGATAAA---CGACAAGGACTCTGATTTTGCAACGCGTGTTATTGCG 12036 Query 57984 TTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAG 58043 || || || || || | ||||| || || ||| | || || ||| ||||| Sbjct 12037 TTTGCGTGTGTGGAGGGACTGTTCTTCAGCGGATCGTTCGCGTCCATCTTCTGGCTGAAG 12096 Query 58044 AAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGT 58103 ||||| || || |||||||| || |||||| |||||||||||||||||| || || || Sbjct 12097 AAACGTGGTCTTATGCCCGGTCTTACGTTTTCCAACGAGTTGATATCGCGTGATGAAGGC 12156 Query 58104 CTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGAT 58163 || ||| | || || || ||| || | | || |||| | | || Sbjct 12157 CTGCATTACCAATTCGCAGTTCTTATGAACAATACGCTCGTGAATAGATGCCCCAAAGAA 12216 Query 58164 CGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCC 58223 || | || ||| | | || || || | ||| ||| | |||||||| |||| | Sbjct 12217 AAGATACTTGAGATTGTGAAGGATGCTGTGGAGATTGAAGAGGAGTTTGTGTCCGATTCT 12276 Query 58224 CTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTT 58283 | || ||| | || |||| |||||| | ||||||| ||||||||||||| ||| Sbjct 12277 TTGCCCGTGTCACTGATCGGCATGAACTGCAAGTTGATGTGCCAGTACATTGAGTTCGTT 12336 Query 58284 GCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCCGTTT 58343 || ||| | | | | || ||| | | ||| |||||| ||||||||||| Sbjct 12337 GCTGACGGCATACTCGTTGATCTGGGCGTTGGGCGCAGGTACAACGTACAAAATCCGTTT 12396 Query 58344 GATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGC 58403 ||||| ||| | || ||||| |||||||| ||||| || || || | |||| Sbjct 12397 GATTTCATGGAGAATATTTCGCTGTTTGGCAAGACGAACTTCTTTGAGAAGAGAGTTGCT 12456 Query 58404 GAATATCAAAAA 58415 || ||||| ||| Sbjct 12457 GAGTATCAGAAA 12468 >seq303 Length=146937 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| || ||||||||||| || || |||| || ||| ||||| Sbjct 97628 ATGCAAATATTCGTAAAGACACTCACAGGCAAAACAATTACGCTCGAGGTGGAATCGTCC 97569 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || || ||| ||||||||| || | |||||||| ||| Sbjct 97568 GACACAATCGAAAATGTAAAGGCGAAGATACAGGACAAGGAGGGGATACCGCCCGATCAG 97509 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || ||||| ||||| || ||| | || || ||| ||||||| |||||| Sbjct 97508 CAACGGCTCATATTTGCTGGGAAGCAGCTTGAGGATGGACGGACACTGAGCGACTATAAC 97449 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || || |||| || || || || || || Sbjct 97448 ATACAGAAGGAGAGTACGCTGCACTTGGTGCTCAGGCTTAGAGGAGG 97402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764672655200