Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq242 129 8e-25 >seq242 Length=24773 Score = 129 bits (142), Expect = 8e-25 Identities = 350/527 (66%), Gaps = 9/527 (2%) Strand=Plus/Minus Query 36194 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 36253 || || |||||||||||||| || |||||||| || ||||| || || ||||| || ||| Sbjct 12140 ATCAACTCGTTGGAAAACGTAAGACCGGGCATAAGACCACGTTTCTTCAGCCAGAAGATG 12081 Query 36254 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCT 36313 ||||| || ||||| ||||| | ||| || || |||||| ||||||| | | | Sbjct 12080 GACGCGAACGATCCGCTGAAGAACAGTCCCTCCACACACGCAAACGCAATAACACGCGTT 12021 Query 36314 CCATAACC---GGCACTGTCATGTATCCACTTTTGAGC-CCAATCGGCCTTCTTTTTTAC 36369 || || | | | |||| | |||||| ||| ||| ||| || |||||| | || || Sbjct 12020 GCAAAATCAGAGTCCTTGTCGTTTATCCA-TTTAAAGCACCACTCCGCCTTCCTCTTCAC 11962 Query 36370 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATA 36429 || | | || ||||| || || ||| ||| || | || || | ||| Sbjct 11961 CGTGTTTATGTTAGCAATCGCATTGAACAGGAAGTCTTTCTCCTCCTGGTCCTTGATATA 11902 Query 36430 TGTATCAATCAAAAGACTA-TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATC 36488 || ||||||| | || | |||||||| || | ||| ||||| || || || | Sbjct 11901 CGTGTCAATCAGCA-ACGAGTACATTTCGCTGTGCACGTTCTCAATCATAATCTGGAAGC 11843 Query 36489 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTC-TGTACAAAATCGTTCTGCTAAATTT 36547 ||||||| || | ||||| ||| |||||| || || || | | | || | ||| Sbjct 11842 CGTAGAAGCAGCGCGCCTCCTTAAGCTGTACCTCACGTGAGAAGTTCTCCAGC-AGGTTT 11784 Query 36548 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 36607 || || || || ||||| ||||| || ||||| | || | ||| |||| Sbjct 11783 TCGTTTACAATGCCGTCCGATGCTGCGAAGAACGCAAGAACGTACGATATGAAATGGCGC 11724 Query 36608 TCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 36667 || | | || | ||||| |||| || ||||| || | ||| || ||||| ||| Sbjct 11723 TCATCACAGTTCAGCCTGTTCCAGTCATCAATGTCTTTGGACAGATCAACCTCTTCAACT 11664 Query 36668 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 36714 ||||| ||||||| | ||||| || ||||| | ||| | ||| || Sbjct 11663 GTCCAGAATGATGACAGTGCCTGCTTGTACATCTGCCATACGTCCTG 11617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170249580400