Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq155 125 7e-24 seq303 120 3e-22 seq242 105 7e-18 >seq155 Length=106166 Score = 125 bits (138), Expect = 7e-24 Identities = 173/236 (73%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 139532 ACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAA 139591 ||| | || |||| || | || |||||||| | |||| ||| || || | ||| ||| Sbjct 85243 ACACGTCCTCCTCTCAATCTCAGCACTAAGTGCAACGTACTCTCCTTCTGCACGTTGTAA 85302 Query 139592 TCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC 139650 || || | || | || | ||||||||||| || |||||| |||| || ||||||||||| Sbjct 85303 TCACTAAGAGTACGTCCA-TCTTCGAGCTGCTTGCCAGCAAAGATAAGCCGTTGCTGATC 85361 Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCC--ACTGTGTCGGTG 139708 |||||||||||| || ||||| ||| |||| |||| | || | | ||||| | Sbjct 85362 GGGAGGTATGCCCTCCTTGTC-CTGAATTTTACTTTTCAC-GTCGCATATCGTGTCTGAA 85419 Query 139709 GGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||||||| || | |||||||| || | || ||||| || |||||||| Sbjct 85420 GGCTCTACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTTACAAAGATTTGCAT 85475 >seq303 Length=146937 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||| | |||| ||| || || |||||||| ||||||| ||| | || | || || Sbjct 97420 ACCAAGTGCAGCGTACTCTCCTTCTGTATGTTATAGTCGCTCAGTGTCCGTCCA-TCCTC 97478 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || |||||| | || || |||||||||||||| ||||| || || ||||| Sbjct 97479 AAGCTGCTTCCCAGCAAATATGAGCCGTTGCTGATCGGGCGGTATCCCCTCCTTGTCCTG 97538 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 || || |||| | ||| | |||||||| | |||||||| | || | || || Sbjct 97539 TATCTTCGCCTTTACATTTTCGATTGTGTCGGACGATTCCACCTCGAGCGTAATTGTTTT 97598 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | || ||||||||||||||||| Sbjct 97599 GCCTGTGAGTGTCTTTACGAATATTTGCAT 97628 >seq242 Length=24773 Score = 105 bits (116), Expect = 7e-18 Identities = 249/366 (68%), Gaps = 15/366 (4%) Strand=Plus/Plus Query 52582 TTGAAATGGATCGAAAACGACAAAGCCACT---TTTGCCGAACGTCTGGTCGCGTTTGCT 52638 || |||||||| ||||||||| | | || ||||| ||| | | |||||||| Sbjct 11986 TTTAAATGGAT---AAACGACAAGGACTCTGATTTTGCAACGCGTGTTATTGCGTTTGCG 12042 Query 52639 ATAGTGGAAGGTGTGttttttt-CGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCT 52696 ||||| || |||| || ||| | ||| ||| | || || | | || || | Sbjct 12043 TGTGTGGAGGGACTGTTCTTCAGCGGATCGTTC-GCGTCCATCTTCTGGCTGAAGAAACG 12101 Query 52697 TGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGC 52756 ||| | || ||||||| || |||||| |||||||||||||||||| || ||||| ||| Sbjct 12102 TGGTCTTA-TGCCCGGTCTTACGTTTTCCAACGAGTTGATATCGCGTGATGAAGGCCTGC 12160 Query 52757 ACACAGATTTTGCGTGTTTGTAT-TATAATACGCGCGTTAAAGAAAAATTGTCATATGAA 52815 | | || || ||| ||| | ||||||| ||| | | | || | | ||| Sbjct 12161 ATTACCAATTCGC-AGTTCTTATGAACAATACGCTCGTGA---ATAGATGCCCCAAAGAA 12216 Query 52816 AAAATTCTAGACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCT 52875 || || || || || | || || || || || |||||| | |||||| | | || || Sbjct 12217 AAGATACTTGAGATTGTGAAGGATGCTGTGGAGATTGAAGAGGAGTTTGTGTCCGATTCT 12276 Query 52876 TTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTT 52935 || ||||| ||| || | ||||||||| | |||||||| ||||||| ||||| ||| Sbjct 12277 TTGCCCGTGTCACTGATCGGCATGAACTGCAAGTTGATGTGCCAGTACATTGAGTTCGTT 12336 Query 52936 GCGGAC 52941 || ||| Sbjct 12337 GCTGAC 12342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062077752000