Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq242 114 2e-20 >seq242 Length=24773 Score = 114 bits (126), Expect = 2e-20 Identities = 343/521 (66%), Gaps = 9/521 (2%) Strand=Plus/Minus Query 50002 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 50061 |||||||||||||| || |||||||| || ||||| || || ||||| || |||||||| Sbjct 12134 TCGTTGGAAAACGTAAGACCGGGCATAAGACCACGTTTCTTCAGCCAGAAGATGGACGCG 12075 Query 50062 AATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC---A 50118 || || || ||||| | ||| || || ||||| |||| || | | | | | Sbjct 12074 AACGATCCGCTGAAGAACAGTCCCTCCACACACGCAAACGCAATAACACGCGTTGCAAAA 12015 Query 50119 TAACTGGCGCTGTCATGTATCCACTTTTGAGC-CCAATCGGCCTTCTTTTTTACACAAGG 50177 | | | | |||| | |||||| ||| ||| ||| || |||||| | || || Sbjct 12014 TCAGAGTCCTTGTCGTTTATCCA-TTTAAAGCACCACTCCGCCTTCCTCTTCACCGTGTT 11956 Query 50178 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 50237 || | | || ||||| || || ||| ||| || | || || | ||| || || Sbjct 11955 TATGTTAGCAATCGCATTGAACAGGAAGTCTTTCTCCTCCTGGTCCTTGATATACGTGTC 11896 Query 50238 GATCAAAAGACTA-TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 50296 |||| | || | |||||||| || | ||| ||||| ||||| || ||||||| Sbjct 11895 AATCAGCA-ACGAGTACATTTCGCTGTGCACGTTCTCAATCATAATCTGGAAGCCGTAGA 11837 Query 50297 AACATCTAGCCTCGGTAATCTGCACTTC-TGTACAAAATCGTTCAGCTAAATTTTCATTC 50355 | || | ||||| ||| ||| || || || || | | |||| | ||||| || Sbjct 11836 AGCAGCGCGCCTCCTTAAGCTGTACCTCACGTGAGAAGTTCTCCAGC-AGGTTTTCGTTT 11778 Query 50356 ACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG 50415 || || ||||| ||||| || ||||| | || | ||| ||||| || | Sbjct 11777 ACAATGCCGTCCGATGCTGCGAAGAACGCAAGAACGTACGATATGAAATGGCGCTCATCA 11718 Query 50416 GGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAA 50475 | || | ||||| |||| || ||||| || | ||| || ||||| |||||||| Sbjct 11717 CAGTTCAGCCTGTTCCAGTCATCAATGTCTTTGGACAGATCAACCTCTTCAACTGTCCAG 11658 Query 50476 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||||||| | ||||| || ||||| | ||| | ||| || Sbjct 11657 AATGATGACAGTGCCTGCTTGTACATCTGCCATACGTCCTG 11617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266016708400