Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq242 132 6e-26 >seq242 Length=24773 Score = 132 bits (146), Expect = 6e-26 Identities = 368/553 (67%), Gaps = 11/553 (2%) Strand=Plus/Minus Query 42067 TGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126 |||||| | | | ||||| || ||||| | || || |||||||||||||| || || Sbjct 12174 TGCGAATTGGTAATGCAGGCCTTCATCACGCGATATCAACTCGTTGGAAAACGTAAGACC 12115 Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGAT 42186 |||||| || ||||| || || ||||| || || ||||| || ||||| ||||| | Sbjct 12114 GGGCATAAGACCACGTTTCTTCAGCCAGAAGATGGACGCGAACGATCCGCTGAAGAACAG 12055 Query 42187 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC---GGCACTGTCATGTAT 42243 ||| || || |||||| ||||||| | | | || || | | | |||| | ||| Sbjct 12054 TCCCTCCACACACGCAAACGCAATAACACGCGTTGCAAAATCAGAGTCCTTGTCGTTTAT 11995 Query 42244 CCACTTTTGAGC-CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302 ||| ||| ||| ||| || |||||| | || || || | | || ||||| | Sbjct 11994 CCA-TTTAAAGCACCACTCCGCCTTCCTCTTCACCGTGTTTATGTTAGCAATCGCATTGA 11936 Query 42303 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA-TACATT 42361 | || ||| ||| || | || || | ||| || || |||| | || | |||||| Sbjct 11935 ACAGGAAGTCTTTCTCCTCCTGGTCCTTGATATACGTGTCAATCAGCA-ACGAGTACATT 11877 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || | ||| ||||| ||||| || |||||||| || | ||||| ||| | Sbjct 11876 TCGCTGTGCACGTTCTCAATCATAATCTGGAAGCCGTAGAAGCAGCGCGCCTCCTTAAGC 11817 Query 42422 TGTACTTC-TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 ||||| || || || | | |||| | |||||||| || || ||||| ||||| Sbjct 11816 TGTACCTCACGTGAGAAGTTCTCCAGC-AGGTTTTCGTTTACAATGCCGTCCGATGCTGC 11758 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-CGGTGTTAATTTATTCCAAT 42539 || ||||| | || | ||| |||| || || | || | | | ||||| | Sbjct 11757 GAAGAACGCAAGAACGTACGATATGAAATGGCGCTCATCACAGT-TCAGCCTGTTCCAGT 11699 Query 42540 CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTT 42599 ||| || ||||| || | ||| || ||||| || ||||| ||||||| ||||| | Sbjct 11698 CATCAATGTCTTTGGACAGATCAACCTCTTCAACTGTCCAGAATGATGACAGTGCCTGCT 11639 Query 42600 TATACATATTCCA 42612 | ||||| | ||| Sbjct 11638 TGTACATCTGCCA 11626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136599335600