Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq242 156 6e-33 >seq242 Length=24773 Score = 156 bits (172), Expect = 6e-33 Identities = 557/861 (65%), Gaps = 46/861 (5%) Strand=Plus/Plus Query 125013 CATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTC 125072 || ||| | ||| | |||||||| |||| | | | || || ||||| || |||||||| Sbjct 11617 CAGGACGTATGGCAGATGTACAAGCAGGCACTGTCATCATTCTGGACAGTTGAAGAGGTT 11676 Query 125073 GATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT 125132 ||||||||||| ||| | | || ||| | | | | |||| | |||||| | || Sbjct 11677 GATCTGTCCAAAGACATTGATGACTGGAACAGGC--TGAACTGTGA-TGAGCGCCATTTC 11733 Query 125133 ATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTG 125192 |||||| || || | || ||||| || | || || || || || ||||| || ||| || Sbjct 11734 ATATCGTACGTTCTTGCGTTCTTCGCAGCATCGGACGGCATTGTAAACGAAAACCTGCTG 11793 Query 125193 ACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATC 125252 ||||| | ||| | || |||| | ||||| ||||| ||||| || Sbjct 11794 GAGAACTTCTCACGTGAGGTACAGCTTAAGGAGGCGCGCTGCTTCTACGGCTTCCAGATT 11853 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 |||||||||||||||||| ||||||||||| |||||||||| ||| || || Sbjct 11854 ATGATTGAGAACGTGCACAGCGAAATGTACTCGTTGCTGATTGACACGTATATCAAGGAC 11913 Query 125313 CCGCAACGTAAACACATGCTCTTTAACGCAATCG---------ACACGGTGCCGTCTATA 125363 | | | ||| || | || || || || || | |||||||| | Sbjct 11914 CAGGAGGAGAAAGACTTCCTGTTCAATGCGATTGCTAACATAAACACGGTGAAG------ 11967 Query 125364 CGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGAT-GACGACAAG---TCTTCGTACGC 125419 | ||||| | | |||| || | || ||| |||||||| ||| | || Sbjct 11968 ---AGGAAGGCGGAGT-GGTGCTT---TAAATGGATAAACGACAAGGACTCTGATTTTGC 12020 Query 125420 CGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT-TTCGGGTAGTTTTGCGG 125478 | | | || || || || ||||| | ||||| ||| | | || ||| Sbjct 12021 AACGCGTGTTATTGCGTTTGCGTGTGTGGAGGGACTGTTCTTCAGCGGATCG-TTCGCGT 12079 Query 125479 CCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTA 125538 ||||||| ||||| ||||| || || || |||||||| || ||| |||||||| | Sbjct 12080 CCATCTTCTGGCTGAAGAAACGTGGTCTTATGCCCGGTCTTACGTTTTCCAACGAGTTGA 12139 Query 125539 TATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGC 125598 |||| || || || ||||| || | | || || |||| || ||| || || Sbjct 12140 TATCGCGTGATGAAGGCCTGCATTACCAATTCGCAGTTCTTATG------AACAATACGC 12193 Query 125599 GTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGA 125658 || || | |||| | | | |||||| | | | ||||| | ||||| ||| || Sbjct 12194 -TCGTGAAT--AGATGCCCCAAAGAAAAGATACTTGAGATTGTGAAGGATGCTGTGGAGA 12250 Query 125659 TAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGC 125718 | ||| | |||||| | |||| || | || || |||| ||||||||||||||| Sbjct 12251 TTGAAGAGGAGTTTGTGTCCGATTCTTTGCCCGTGTCACTGATCGGCATGAACTGCAAGT 12310 Query 125719 TAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG---ATTGGCC 125775 | |||||| ||||||| ||||| || || || | |||| || || |||| | Sbjct 12311 TGATGTGCCAGTACATTGAGTTCGTTGCTGACGGCATACTCGTTGATCTGGGCGTTGGGC 12370 Query 125776 GCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTA 125835 ||| | ||||||| | ||||| |||||||||||| | || || || || | Sbjct 12371 GCAGG---TACAACGTACAAAATCCGTTTGATTTCATGGAGAATATTTCGCTGTTTGGCA 12427 Query 125836 AGACCAACTTTTTCGAGAAGA 125856 |||| ||||| || ||||||| Sbjct 12428 AGACGAACTTCTTTGAGAAGA 12448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056328395600