Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq303 134 3e-26 >seq303 Length=146937 Score = 134 bits (148), Expect = 3e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 104323 TTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||| || |||| ||||| ||||| || || | || | ||| || ||||| || || Sbjct 97392 TTTCTTCTTTCCTCCTCTAAGCCTGAGCACCAAGTGCAGCGTACTCTCCTTCTGTATGTT 97451 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 |||||| || || | || || || || || || |||||||| || |||| || || Sbjct 97452 ATAGTCGCTCAGTGTCCGTCCATCCTCAAGCTGCTTCCCAGCAAATATGAGCCGTTGCTG 97511 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||| || ||||| || || || ||||| ||||| || ||||||||||| | || ||| Sbjct 97512 ATCGGGCGGTATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTTTCGATTGTGTCGGA 97571 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 | ||| ||||| || ||||| || || || || ||||| ||||| ||||| ||||||| Sbjct 97572 CGATTCCACCTCGAGCGTAATTGTTTTGCCTGTGAGTGTCTTTACGAATATTTGCATTT 97630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393826789480