Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq155 141 8e-29 seq303 86.0 6e-12 >seq155 Length=106166 Score = 141 bits (156), Expect = 8e-29 Identities = 172/233 (74%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 94776 ACAC-TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834 |||| |||||||||||||| || ||| |||||||| ||| ||||| |||||||| ||| Sbjct 85243 ACACGTCCTCCTCTCAATCTCAGCACTAAGTGCAACGTACTCTCCTTCTGCACGTTGTAA 85302 Query 94835 TCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 || || | ||| ||| || ||||| || || ||||||| | | ||||||||| Sbjct 85303 TCACTAAGAGTACGTCCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCGTTGCTGATCG 85362 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 ||||| || || || ||||| | |||||| || ||| ||| | ||||| | | Sbjct 85363 GGAGGTATGCCCTCCTTGTCCTGAATTTTACTTTTCACGTCGCATATCGTGTCTGAAGGC 85422 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||| ||||||||| || || ||||| || || |||||||| ||||| Sbjct 85423 TCTACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTTACAAAGATTTGCAT 85475 >seq303 Length=146937 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||||||||| | | | ||||||||||| ||| ||||| || | |||||| ||||| Sbjct 97401 TCCTCCTCTAAGCCTGAGCACCAAGTGCAGCGTACTCTCCTTCTGTATGTTATAGTCGCT 97460 Query 94840 CATAGTGTTGG--AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | ||||| | |||||| ||||| || || |||| || | | ||||||||| || Sbjct 97461 C--AGTGTCCGTCCATCCTCAAGCTGCTTCCCAGCAAATATGAGCCGTTGCTGATCGGGC 97518 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || || || ||||| | || || ||||| || ||| ||||| | || Sbjct 97519 GGTATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTTTCGATTGTGTCGGACGATTCC 97578 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||| || ||||| || || || || || || || || ||||| Sbjct 97579 ACCTCGAGCGTAATTGTTTTGCCTGTGAGTGTCTTTACGAATATTTGCAT 97628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289462871600