Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq242 131 2e-25 >seq242 Length=24773 Score = 131 bits (144), Expect = 2e-25 Identities = 346/519 (67%), Gaps = 11/519 (2%) Strand=Plus/Minus Query 33346 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33405 |||||||||||||| || |||||||| || ||||| || || ||||| || ||||| ||| Sbjct 12134 TCGTTGGAAAACGTAAGACCGGGCATAAGACCACGTTTCTTCAGCCAGAAGATGGACGCG 12075 Query 33406 AATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33465 || ||||| ||||| | ||| || || ||||| ||||||| | | | || || Sbjct 12074 AACGATCCGCTGAAGAACAGTCCCTCCACACACGCAAACGCAATAACACGCGTTGCAAAA 12015 Query 33466 CC---GGCGCTGTCATGTATCCACTTTTGAGC-CCAATCGGCCTTCTTTTTTACACAAGG 33521 | | | |||| | |||||| ||| ||| ||| || |||||| | || || Sbjct 12014 TCAGAGTCCTTGTCGTTTATCCA-TTTAAAGCACCACTCCGCCTTCCTCTTCACCGTGTT 11956 Query 33522 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 33581 || | | || ||||| || || ||| ||| || | || || | ||| || || Sbjct 11955 TATGTTAGCAATCGCATTGAACAGGAAGTCTTTCTCCTCCTGGTCCTTGATATACGTGTC 11896 Query 33582 GATCAAAAGACTA-TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 33640 |||| | || | |||||||| || | ||| ||||| ||||| || ||||||| Sbjct 11895 AATCAGCA-ACGAGTACATTTCGCTGTGCACGTTCTCAATCATAATCTGGAAGCCGTAGA 11837 Query 33641 AACATCTAGCCTCGGTAATCTGTACTTC-TGT-ACAAAATCGTTCCGCCAAATTTTCATT 33698 | || | ||||| ||| |||||| || || | || || ||| || ||||| || Sbjct 11836 AGCAGCGCGCCTCCTTAAGCTGTACCTCACGTGAGAAGTTC--TCCAGCAGGTTTTCGTT 11779 Query 33699 CACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 33758 || || ||||| ||||| || ||||| | || | ||| |||| || || Sbjct 11778 TACAATGCCGTCCGATGCTGCGAAGAACGCAAGAACGTACGATATGAAATGGCGCTCATC 11719 Query 33759 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCA 33818 | || | ||||| |||| || ||||| || | ||| || ||||| |||||||| Sbjct 11718 ACAGTTCAGCCTGTTCCAGTCATCAATGTCTTTGGACAGATCAACCTCTTCAACTGTCCA 11659 Query 33819 AAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTC 33857 ||||||| | ||||| || ||||| | ||| | ||| Sbjct 11658 GAATGATGACAGTGCCTGCTTGTACATCTGCCATACGTC 11620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944786079600