Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq303 111 1e-19 seq155 96.9 3e-15 >seq303 Length=146937 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| |||||||| | || || ||| | || || |||| ||||| ||||| Sbjct 97629 AATGCAAATATTCGTAAAGACACTCACAGGCAAAACAATTACGCTCGAGGTGGAATCGTC 97570 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| || || ||||| || ||||| || || || || Sbjct 97569 CGACACAATCGAAAATGTAAAGGCGAAGATACAGGACAAGGAGGGGATACCGCCCGATCA 97510 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || ||| | || ||||| || || || | || |||| || || || |||| || || Sbjct 97509 GCAACGGCTCATATTTGCTGGGAAGCAGCTTGAGGATGGACGGACACTGAGCGACTATAA 97450 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 || || || || ||||| || || ||||| ||||| ||||||||||| Sbjct 97449 CATACAGAAGGAGAGTACGCTGCACTTGGTGCTCAGGCTTAGAGGAGGAAA 97399 >seq155 Length=106166 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 |||||||||| ||||||||||| | || || || ||||||| | || || ||| | | Sbjct 85477 CAATGCAAATCTTTGTAAAGACCCTTACGGGCAAGACCATCACGCTTGAGGTAGAGCCTT 85418 Query 25057 CTGACACTAT---CGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||||| || ||| || | || |||| ||| ||||| || || || || || Sbjct 85417 CAGACACGATATGCGACGTGA---AAAGTAAAATTCA-GGACAAGGAGGGCATACCTCCC 85362 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || || ||| |||| ||||| ||||| || | ||||||| || ||| | | ||| Sbjct 85361 GATCAGCAACGGCTTATCTTTGCTGGCAAGCAGCTCGAAGATGGACGTACTCTTAGTGAT 85302 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||| | || || || ||| | || |||||||| || | ||||||||| Sbjct 85301 TACAACGTGCAGAAGGAGAGTACGTTGCACTTAGTGCTGAGATTGAGAGGAGGA 85248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326362832650