Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq242 132 5e-26 >seq242 Length=24773 Score = 132 bits (146), Expect = 5e-26 Identities = 473/729 (65%), Gaps = 8/729 (1%) Strand=Plus/Minus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 ||||| || || || |||||||| ||||||| | || ||||| || | || || Sbjct 12341 TCAGCAACGAACTCAATGTACTGGCACATCAACTTGCAGTTCATGCCGATCAGTGACACG 12282 Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046 || | || |||| || || || | || || | || || || |||| || || | | Sbjct 12281 GGCAAAGAATCGGACACAAACTCCTCTTCAATCTCCACAGCATCCTTCACAATCTCAAGT 12222 Query 93047 ACTCTACTATTTGGTGGTTTTTGT-ACGACATAATTGTACATTAAGCAC-GCAAAGTCGG 93104 | ||| | ||||| | | | | |||| ||||| ||| ||| || || || | | Sbjct 12221 A-TCTTTTCTTTGGGGCATCTATTCACGAGCGTATTGTTCAT-AAGAACTGCGAATTGGT 12164 Query 93105 TATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTC 93164 ||| | ||||| || || ||||||||||| ||| || || | ||| || | || | Sbjct 12163 AATGCAGGCCTTCATCACGCGATATCAACTCGTTGGAAAACGTAAGACCGGGCATAAGAC 12104 Query 93165 CTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGG 93224 | |||||||| ||||| || || || || || || || || | || ||||| Sbjct 12103 CACGTTTCTTCAGCCAGAAGATGGACGCGAACGATCCGCTGAAGAACAGTCCCTCCACAC 12044 Query 93225 CTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAG 93284 ||||| || | || ||| ||||||| | | || | | ||||| ||||||| Sbjct 12043 ACGCAAACGCAATAACACGCGTTGCAAAATCAGAGTCCTTGTCGTTTATCCA-TTTAAAG 11985 Query 93285 C-CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAGCGTTAAATAGGTAATC 93342 | ||| || || || |||| | | | | |||| | || || || || ||| | || Sbjct 11984 CACCACTCCGCCTTCCTCTTCA-CCGTGTTTATGTTAGCAATCGCATTGAACAGGAAGTC 11926 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 | ||| ||| || || || || || || | || || |||||||| || || Sbjct 11925 TTTCTCCTCCTGGTCCTTGATATACGTGTCAATCAGCAACGAGTACATTTCGCTGTGCAC 11866 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||| || ||| ||||| |||||||| || | || ||| | | ||| || || | Sbjct 11865 GTTCTCAATCATAATCTGGAAGCCGTAGAAGCAGCGCGCCTCCTTAAGCTGTACCTCACG 11806 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 || || |||| | || ||||| || || || || || |||||||| || || || | Sbjct 11805 TGAGAAGTTCTCCAGCAGGTTTTCGTTTACAATGCCGTCCGATGCTGCGAAGAACGCAAG 11746 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTT 93582 | | | ||| ||||| ||||||| || ||| | | ||| || | ||||| Sbjct 11745 AACGTACGATATGAAATGGCGCTCATCACAGTTCAGCCTGTTCCAGTCATCAATGTCTTT 11686 Query 93583 TGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642 || ||||| || ||||| || ||||| || |||| ||| | |||||||| | ||| Sbjct 11685 GGACAGATCAACCTCTTCAACTGTCCAGAATGATGACAGTGCCTGCTTGTACATCTGCCA 11626 Query 93643 TATGTCTTG 93651 || ||| || Sbjct 11625 TACGTCCTG 11617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858642164400