Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq168 136 9e-27 >seq168 Length=41216 Score = 136 bits (150), Expect = 9e-27 Identities = 239/346 (69%), Gaps = 8/346 (2%) Strand=Plus/Minus Query 297430 CAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACC 297489 ||| || ||||| || || || ||| |||| |||||| || ||||||| | || || Sbjct 23713 CAGGTTGGTGAAGATGTAACGCGCAGACGCGGCATCCTTGCCGCCCTGCAGGCGCGTGCC 23654 Query 297490 GAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAG 297549 |||||| ||||| |||| | | ||||||||| ||||| || || |||| |||||||| Sbjct 23653 GAACTGCCCCTCAGGCATGAGCAGGTTGATGTTGTTGCTGCCCACGAAATCGTGTGCAAG 23594 Query 297550 GTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC 297609 || | ||| ||| |||||| | | ||||| || || || || ||||| ||||| Sbjct 23593 TTTGATGATCGTCTGCTGCAGACTTACCTCGCCGTGATGGTACGCCGAGTGCTCGGCAAC 23534 Query 297610 GTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATA 297669 ||| || | |||||||||||| | || | | | || | ||| ||| | || Sbjct 23533 GTAGCCCACAAGCTGTGCAACCTTAATCTCTGATTTAAGGTTCCTCTTAAAACAGCAGTA 23474 Query 297670 TATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAG 297729 ||||| ||||| || || || || || || || || || || ||||| || | Sbjct 23473 CATCACCTTCCGCTGTCCCGGCTTAAACCCGTCCACAACGGAGGGTATGCTGCG---AAC 23417 Query 297730 ATCGTACCGC----GAGAACAAAATAAGTTCCTTGTCGATGAAGTC 297771 | || |||| ||||||||||| || || |||| ||||||||| Sbjct 23416 GTTGT-CCGCCATAGAGAACAAAATCAGCTCTTTGTTGATGAAGTC 23372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102875619498500