Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq303 95.1 1e-14 seq155 89.7 5e-13 >seq303 Length=146937 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | |||| ||| || || || || || |||| || || || ||| || Sbjct 97419 CACCAAGTGCAGCGTACTCTCCTTCTGTATGTTATAGTCGCTCAGTGTCCGTCCATCCTC 97478 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| | || | || ||||||||||| ||||| |||||||||||| Sbjct 97479 AAGCTGCTTCCCAGCAAATATGAGCCGTTGCTGATCGGGCGGTATCCCCTCCTTGTCCTG 97538 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || ||| ||| | | ||||| ||||| | || || |||| || | ||||| Sbjct 97539 TATCTTCGCCTTTACATTTTCGATTGTGTCGGACGATTCCACCTCGAGCGTAATTGTTTT 97598 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || || ||||| || || ||||| Sbjct 97599 GCCTGTGAGTGTCTTTACGAATATTTGCAT 97628 >seq155 Length=106166 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| || ||| || || | |||| ||| || || | |||||||| | | || || Sbjct 85258 AATCTCAGCACTAAGTGCAACGTACTCTCCTTCTGCACGTTGTAATCACTAAGAGTACGT 85317 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || ||||| || ||||| |||| | || |||||||||||||||||||||||| Sbjct 85318 CCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCGTTGCTGATCGGGAGGTATGCCCTCC 85377 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCG---ACGGTGTCCGTACTCTCGACTTCGACG 127072 |||||| ||| ||| | ||| | ||| | ||||| | | ||| || || | Sbjct 85378 TTGTCC-TGAATTT-TACTTTTCACG-TCGCATATCGTGTCTGAAGGCTCTACCTCAAGC 85434 Query 127073 GTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || ||||| || || || |||||||| || ||||| Sbjct 85435 GTGATGGTCTTGCCCGTAAGGGTCTTTACAAAGATTTGCAT 85475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498957434400