Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq155 127 2e-24 seq303 122 1e-22 >seq155 Length=106166 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || | || ||| | ||||| ||||||||||| || | ||||| || Sbjct 85249 CCTCCTCTCAATCTCAGCACTAAGTGCAACGTACTCTCCTTCTGCACGTTGTAATCACTA 85308 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || |||||||||||||| || || || | || ||||| |||| || Sbjct 85309 AGAGTACGTCCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCGTTGCTGATCGGGAGGT 85368 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGC-CACCGTGTCGCTCGATTCCAC 46545 | || |||||||||| || || | || | |||||| | |||||| | || || Sbjct 85369 ATGCCCTCCTTGTCCTGAATTTTACTTTTCA-CGTCGCATATCGTGTCTGAAGGCTCTAC 85427 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | ||||||||| |||||||| || || || ||||||||||||||| Sbjct 85428 CTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTTACAAAGATTTGCATT 85476 >seq303 Length=146937 Score = 122 bits (134), Expect = 1e-22 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 || |||||||| | | | ||||| |||| ||||||||||| || || || |||||| Sbjct 97399 TTTCCTCCTCTAAGCCTGAGCACCAAGTGCAGCGTACTCTCCTTCTGTATGTTATAGTCG 97458 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || || || | || || |||||||| || || ||||| | || ||||| |||| | Sbjct 97459 CTCAGTGTCCGTCCATCCTCAAGCTGCTTCCCAGCAAATATGAGCCGTTGCTGATCGGGC 97518 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | | |||||||||| |||||| ||| | | | | |||||| ||||||| Sbjct 97519 GGTATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTTTCGATTGTGTCGGACGATTCC 97578 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595 || || | ||| || |||||||| || || || || || || |||||||||| Sbjct 97579 ACCTCGAGCGTAATTGTTTTGCCTGTGAGTGTCTTTACGAATATTTGCATTT 97630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236209701200