Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq242 118 1e-21 seq303 116 4e-21 >seq242 Length=24773 Score = 118 bits (130), Expect = 1e-21 Identities = 197/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || ||||| || || ||| |||||||| ||| |||||||| || || || ||| Sbjct 11903 TACGTGTCAATCAGCAACGAGTACATTTCGCTGTGCACGTTCTCAATCATAATCTGGAAG 11844 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||||| |||||||| | ||| || || | | ||| ||| | ||| ||| Sbjct 11843 CCGTAGAAGCAGCGCGCCTCCTTAAGCTGTACCTCACGTGAGAAGTTCTCCAGCAGGTTT 11784 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 ||||| || |||||||| || ||||| || || || |||| | |||||||||||| Sbjct 11783 TCGTTTACAATGCCGTCCGATGCTGCGAAGAACGCAAGAACGTACGATATGAAATGGCGC 11724 Query 133348 TCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACG 133407 || | ||||| | | |||||| |||| |||||||| || ||||| || || Sbjct 11723 TCATCACAGTTCAGCCTGTTCCAGTCATCAATGTCTTTGGACAGATCAACCTCTTCAACT 11664 Query 133408 GTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCC 133452 ||||| || || | | || | |||||||| ||| | |||| Sbjct 11663 GTCCAGAATGATGACAGTGCCTGCTTGTACATCTGCCATACGTCC 11619 >seq303 Length=146937 Score = 116 bits (128), Expect = 4e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||||||||||||||| || ||||| |||||||| || || |||| || || | Sbjct 97630 AAATGCAAATATTCGTAAAGACACTCACAGGCAAAACAATTACGCTCGAGGTGGAATCGT 97571 Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||||| | ||| | || | || || | ||||| ||||| || || |||| | Sbjct 97570 CCGACACAATCGAAAATGTAAAGGCGAAGATACAGGACAAGGAGGGGATACCGCCCGATC 97511 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || |||||||| | || || || ||||| || || | || || || | |||||| | Sbjct 97510 AGCAACGGCTCATATTTGCTGGGAAGCAGCTTGAGGATGGACGGACACTGAGCGACTATA 97451 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||| || ||||| |||||||| |||||||| Sbjct 97450 ACATACAGAAGGAGAGTACGCTGCACTTGGTGCT 97417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170861830400