Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq303 109 4e-19 seq155 104 2e-17 >seq303 Length=146937 Score = 109 bits (120), Expect = 4e-19 Identities = 167/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 |||||||| || | ||| | |||||||| | || || || ||||| ||||||||||| Sbjct 97399 TTTCCTCCTCTAAGCCTGAGCACCAAGTGCAGCGTACTCTCCTTCTGTATGTTATAGTCG 97458 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || | ||| |||| || ||||| || || |||||||| || |||||||| || || Sbjct 97459 CTCAGTGTCCGTCCATCCTCAAGCTGCTTCCCAGCAAATATGAGCCGTTGCTGATCGGGC 97518 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATT-CACCGGCC-- 34928 || | |||||||||||| |||||| || || || | |||||| ||| | Sbjct 97519 GGTATCCCCTCCTTGTCCTGTATCTTCGCCTTTAC--AT--TTTCGATTGTGTCGGACGA 97574 Query 34929 -TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||| || || ||||| || ||||| ||||| || || || ||||| Sbjct 97575 TTCCACCTCGAGCGTAATTGTTTTGCCTGTGAGTGTCTTTACGAATATTTGCAT 97628 >seq155 Length=106166 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 34742 TATCCAATCATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAAT 34801 |||| || || |||||| ||||| |||| || ||||| | || || || ||||| | Sbjct 85236 TATCTAAACACGTCCTCCTCTCAATCTCAGCACTAAGTGCAACGTACTCTCCTTCTGCAC 85295 Query 34802 GTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTG 34861 ||| || || ||| | ||| |||| || ||||| || || ||||| || || ||||| Sbjct 85296 GTTGTAATCACTAAGAGTACGTCCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCGTTG 85355 Query 34862 CTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTC 34921 ||| || | || | ||||||||||| ||| || ||| ||| ||||| || Sbjct 85356 CTGATCGGGAGGTATGCCCTCCTTGTCCTGAATTTTACTTTTCACGTCGCATATCGTGTC 85415 Query 34922 ACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||| || || | || ||||| || ||||| || ||||| |||||||| ||||| Sbjct 85416 TGAAGGCTCTACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTTACAAAGATTTGCAT 85475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632373493680