Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq303 86.0 5e-12 seq155 86.0 5e-12 >seq303 Length=146937 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| | |||||| || ||||| ||||| || || || || || || Sbjct 97402 CCTCCTCTAAGCCTGAGCACCAAGTGCAGCGTACTCTCCTTCTGTATGTTATAGTCGCTC 97461 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | |||||| || |||||||| || || || ||||| | || Sbjct 97462 AGTGTCCGTCCATCCTCAAGCTGCTTCCCAGCAAATATGAGCCGTTGCTGATCGGGCGGT 97521 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| |||||| | | | || |||| |||||| Sbjct 97522 ATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTTTCGATTGTGTCGGACGATTCCACC 97581 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | |||||| ||||| || || | || ||||| || || ||||| Sbjct 97582 TCGAGCGTAATTGTTTTGCCTGTGAGTGTCTTTACGAATATTTGCAT 97628 >seq155 Length=106166 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 || ||| || || | ||| ||||| || || | ||||||||| ||| | || | || Sbjct 85263 CAGCACTAAGTGCAACGTACTCTCCTTCTGCACGTTGTAATCACTAAGAGTACGTCCATC 85322 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | |||||| || ||||| || || || || ||||| | || | |||||||||||| Sbjct 85323 TTCGAGCTGCTTGCCAGCAAAGATAAGCCGTTGCTGATCGGGAGGTATGCCCTCCTTGTC 85382 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACA--GACTCTGACGCCTCCACCTCCACCGTAATC 48731 || | |||| ||| || | || | | ||||| | ||| ||||| | ||| || Sbjct 85383 -CTGA-ATTTTACTTTTCACGTCGCATATCGTGTCTGAAGGCTCTACCTCAAGCGTGATG 85440 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| | || |||||||| || ||||| Sbjct 85441 GTCTTGCCCGTAAGGGTCTTTACAAAGATTTGCAT 85475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936160770130