Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq242 129 1e-24 >seq242 Length=24773 Score = 129 bits (142), Expect = 1e-24 Identities = 553/861 (64%), Gaps = 25/861 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || | ||||| |||||||||||||| ||||| || || ||| || ||||| Sbjct 12465 CTGATACTCAGCAACTCTCTTCTCAAAGAAGTTCGTCTTGCCAAACAGCGAAATATTCTC 12406 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 |||||| || || || || ||| ||| || | ||||| | | || | Sbjct 12405 CATGAAATCAAACGGATTTTGTACGTTGTACCTGCGCCCAACGCCCAGATCAACGAGTAT 12346 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | || || ||| |||| ||||| | |||| | || ||||||||| || || || Sbjct 12345 GCCGTCAGCAACGAACTCAATGTACTGGCACATCAACTTGCAGTTCATGCCGATCAGTGA 12286 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||||||||| | | | |||||||| || |||| ||| || ||| |||||||| Sbjct 12285 CACGGGCAAAGAATCGGACACAAACTCCTCTTCAATCTCCACAGCATCCTTCACAATCTC 12226 Query 48079 CTTAACGCGGGACTCTGAGGGTT-TGTTGCGCAGGTGCTTGGCATAGAGCAT--GCAG-G 48134 | | || || || | | || || | || | || | ||| | | | Sbjct 12225 AAGTAT-CTTTTCTTTGGGGCATCTATT---CACGAGCGT---ATTGTTCATAAGAACTG 12173 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | || | |||| |||||| || || || | | ||||||| || ||||| | Sbjct 12172 CGAATTGGTAATGCAGGCCTTCATCACGCGATATCAACTCGTTGGAAAACGTAAGACCGG 12113 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | | || |||||||| || | |||||| || || |||||| | | Sbjct 12112 GCATAAGACCACGTTTCTTCAGCCAGAAGATGGACGCGAACGATCCGCTGAAGAACAGTC 12053 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 ||||||| ||| ||||| | | | | | | ||| || || |||||| |||| Sbjct 12052 CCTCCACACACGCAAACGCAATAACACGCGTTGCAAAATCAGAGTCCTTGTCGTTTATCC 11993 Query 48315 AGG-AAAGCGCCCAGTCTGCCTTCTTCTTGA-----TGCATGGCATCG-TCTCTATGGCC 48367 | ||||| || | || |||||| |||| | | ||| | | || | || | Sbjct 11992 ATTTAAAGCACC-ACTCCGCCTTCCTCTTCACCGTGTTTATGTTAGCAATCGCATTGAAC 11934 Query 48368 CGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 ||||| |||| | | | |||| |||| | ||| || | |||| | |||| Sbjct 11933 AGGAAG----TCTTTCTC-CTCCTG-GTCCTTGATATACGTGTCAATCAGCAACGAGTAC 11880 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 || || |||||| ||||| || |||||||| ||||||||| | ||||| Sbjct 11879 ATTTCGCTGTGCACGTTCTCAATCATAATCTGGAAGCCGTAGAAGCAGCGCGCCTCCTTA 11820 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | ||| || || ||||| |||||||||| || || || || || || || || || Sbjct 11819 AGCTGTACCTCACGTGAGAAGTTCTCCAGCAGGTTTTCGTTTACAATGCCGTCCGATGCT 11760 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607 || ||||| ||||| || | | |||||||||||| | | | || |||||| Sbjct 11759 GCGAAGAACGCAAGAACGTACGATATGAAATGGCGCTCATCACAGTTCAGCCTGTTCCAG 11700 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTT 48667 | | | ||||||| ||| || || ||||| || |||||||| || | ||||| | Sbjct 11699 TCATCAATGTCTTTGGACAGATCAACCTCTTCAACTGTCCAGAATGATGACAGTGCCTGC 11640 Query 48668 TTGTACATGCCCCATATGTCC 48688 |||||||| ||||| |||| Sbjct 11639 TTGTACATCTGCCATACGTCC 11619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529190310400