Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq242 143 5e-29 >seq242 Length=24773 Score = 143 bits (158), Expect = 5e-29 Identities = 346/517 (67%), Gaps = 10/517 (2%) Strand=Plus/Plus Query 25478 TATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGG 25537 ||||| ||||||||||| |||| | ||| |||||| | |||||| |||||||| Sbjct 11624 TATGGCAGATGTACAAGCAGGCACTGTCATCATTCTGGACAGTTGAAGAGGTTGATCTGT 11683 Query 25538 CCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACG 25597 |||| ||||| || | |||| || || | || |||| ||||| | ||||| Sbjct 11684 CCAAAGACATTGATGACTGGAACAGGCTGAACTGTGATGAGCGCCATTTCATATCGTACG 11743 Query 25598 TGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCA 25657 | | || ||||| ||||| || || || || || ||||| || ||| |||| ||| Sbjct 11744 TTCTTGCGTTCTTCGCAGCATCGGACGGCATTGTAAACGAAAACCTGCTGGAGAACTTCT 11803 Query 25658 CCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAA 25717 | | || || ||| |||||| || |||||||| |||||||| || || | Sbjct 11804 CACGTGAGGTACAGCTTAAGGAGGCGCGCTGCTTCTACGGCTTCCAGATTATGATTGAGA 11863 Query 25718 ATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCG 25774 | |||||| || |||| | | | ||||| ||||| || | ||| | | Sbjct 11864 ACGTGCACAGCGAAATGTA---CTCGTTGCTGATTGACACGTATATCAAGGACCAGGAGG 11920 Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 ||| ||| ||||| ||| || | ||||| || | |||||||||||| || Sbjct 11921 AGAAAGACTTCCTGTTCAATGCGATTGCTAACATAAACACGGTGAAGAGGAAGGCGGAGT 11980 Query 25835 GGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 || | | || ||||| ||| | || | || |||| ||| | | || |||| Sbjct 11981 GGTGCTTTAAATGGATAAACGACAAGGACTCTGATTTTGCAACGCGTGTTATTGCGTTTG 12040 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGA 25954 | ||||||||| | || |||||||| ||||| ||| ||||||||||||| ||| | | Sbjct 12041 CGTGTGTGGAGGGACTGTTCTTCAGCGGATCGTTCGCGTCCATCTTCTGGCTGAAG-AAA 12099 Query 25955 AGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAG 25989 | || | |||||||| || ||| |||||||||||| Sbjct 12100 CGTGGTCTTATGCCCGGTCT-TACGTTTTCCAACGAG 12135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841200726400