Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq155 118 1e-21 seq242 100 3e-16 seq303 96.9 3e-15 >seq155 Length=106166 Score = 118 bits (130), Expect = 1e-21 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 137179 ACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAA 137238 ||| | ||||||| || | || ||||| || | ||| || || || | ||||||| Sbjct 85243 ACACGTCCTCCTCTCAATCTCAGCACTAAGTGCAACGTACTCTCCTTCTGCACGTTGTAA 85302 Query 137239 TCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATC 137297 || || | || | || | |||||||| || || |||||| |||| || ||||||||||| Sbjct 85303 TCACTAAGAGTACGTCCA-TCTTCGAGCTGCTTGCCAGCAAAGATAAGCCGTTGCTGATC 85361 Query 137298 GGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGG 137357 |||||||||||| || ||||| |||||| ||| | | | |||||||| || Sbjct 85362 GGGAGGTATGCCCTCCTTGTCCTGAATTTTACTTTTCACGTCGCATATCGTGTCTGAAGG 85421 Query 137358 TTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| |||| || | |||||||| || | || ||||| || |||||||| Sbjct 85422 CTCTACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTTACAAAGATTTGCAT 85475 >seq242 Length=24773 Score = 100 bits (110), Expect = 3e-16 Identities = 169/239 (71%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 50370 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGAC 50429 |||||||| || |||||| |||||||||||| ||||| || ||||| |||| | Sbjct 12109 ATGCCCGGTCTTACGTTTTCCAACGAGTTGATATCGCGTGATGAAGGCCTGCATTACCAA 12168 Query 50430 TTTGCGTGTTTGTACTA-CAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTT 50488 || || ||| || | |||||||| ||| ||| | || | | |||| || | Sbjct 12169 TTCGCA-GTTCTTATGAACAATACGCTCGTGAAT---AGATGCCCCAAAGAAAAGATACT 12224 Query 50489 GGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGT 50548 || || | || || || || || || ||| | |||||| | | || |||| ||||| Sbjct 12225 TGAGATTGTGAAGGATGCTGTGGAGATTGAAGAGGAGTTTGTGTCCGATTCTTTGCCCGT 12284 Query 50549 GGCATTGTTGGGCATGAAC-GCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGAC 50606 | || || | ||||||||| ||| | |||||||| ||||||||||||| ||||| ||| Sbjct 12285 GTCACTGATCGGCATGAACTGCA-AGTTGATGTGCCAGTACATTGAGTTCGTTGCTGAC 12342 >seq303 Length=146937 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 137221 TCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATA 137279 || || |||||||| || ||||||| ||| | || | || || || || || |||||| | Sbjct 97438 TCCTTCTGTATGTTATAGTCGCTCAGTGTCCGTCCA-TCCTCAAGCTGCTTCCCAGCAAA 97496 Query 137280 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 137339 || || |||||||||||||| ||||| || || ||||| || || |||| | Sbjct 97497 TATGAGCCGTTGCTGATCGGGCGGTATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATT 97556 Query 137340 TTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 137399 ||| | ||||| | | ||| || || | || | || ||||| || | ||| ||||| Sbjct 97557 TTCGATTGTGTCGGACGATTCCACCTCGAGCGTAATTGTTTTGCCTGTGAGTGTCTTTAC 97616 Query 137400 GAATATTTGCAT 137411 |||||||||||| Sbjct 97617 GAATATTTGCAT 97628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488542106892000