Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq242 125 6e-24 >seq242 Length=24773 Score = 125 bits (138), Expect = 6e-24 Identities = 550/858 (64%), Gaps = 18/858 (2%) Strand=Plus/Plus Query 43724 CATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTT 43783 || ||| ||||||| |||||||| | |||| | | ||||| ||||||| ||||| ||| Sbjct 11617 CAGGACGTATGGCAGATGTACAAGCAGGCACTGTCATCATTCTGGACAGTTGAAGAGGTT 11676 Query 43784 GATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATA 43843 ||| || | |||||| | | | |||| | || | || ||||| ||| Sbjct 11677 GATCTGTCCAAAGACATTGATGACTGGAACAGGCTGAACTGTGATGAGCGCCATTTCATA 11736 Query 43844 TCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 || | ||| | ||||| || || || ||||| || || || ||||| || | Sbjct 11737 TCGTACGTTCTTGCGTTCTTCGCAGCATCGGACGGCATTGTAAACGAAAACCTGCTGGAG 11796 Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || | | || || || | || || || || || || || || || ||| Sbjct 11797 AACTTCTCACGTGAGGTACAGCTTAAGGAGGCGCGCTGCTTCTACGGCTTCCAGATTATG 11856 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 || || || | || ||||||||| | ||||| || ||||| ||||| || | Sbjct 11857 ATTGAGAACGTGCACAGCGAAATGTACTCGTTGCTGATTGACACGTATATCAAGGACCAG 11916 Query 44024 CACGAGAAGCATCGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATAAAGC 44082 | ||||| | |||| |||||||| | |||| | | || | || || || Sbjct 11917 GAGGAGAAAGACTTCCTGTTCAATGCGATTGCTAACATAAACA-CGGTGAAGAGGAAGGC 11975 Query 44083 AGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTGTCGC 44139 || ||| | ||||||||||||| || || ||| |||| | || || | || Sbjct 11976 GGAGTGGTGCTTTAAATGGATAAACGACAAGGACTCTGATTTTGCAACGCGTGTTATTGC 12035 Query 44140 GTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAA 44199 |||||| |||||| || | ||||| |||||||| ||| |||| || ||| | || Sbjct 12036 GTTTGCGTGTGTGGAGGGACTGTTCTTCAGCGGATCGTTCGCGTCCATCTTCTGGCTGAA 12095 Query 44200 GAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGG 44259 |||||| ||| | ||||| || | |||||||| || ||||| ||| ||||||||||| Sbjct 12096 GAAACGTGGTCTTATGCCCGGTCTTACGTTTTCCAACGAGTTGATATCGCGTGATGAAGG 12155 Query 44260 CTTACATTGCGATTTTGC-TTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCAT 44318 | | |||| | | || || | ||| | | ||| | || | | ||| | Sbjct 12156 CCTGCATTACCAATTCGCAGTTCTTATGA--ACAATACGCTCGTGAATAGATGCCCCAAA 12213 Query 44319 G-TAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACA 44377 | |||| | || || ||||| || || || |||| ||| | || ||| || | Sbjct 12214 GAAAAGATACTT---GAGATTGTGAAGGATGCTGTGGAGATTGAAGAGGAGTTTGTGTCC 12270 Query 44378 ACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGA 44436 | || || || | || || ||||| || | |||||| ||| || ||||| Sbjct 12271 GATTCTTTGCCCGTGTCACTGATCGGCATGAACTGCA-AGTTGATGTGCCAGTACATTGA 12329 Query 44437 ATACATTGCAGATCGTTTACTTTTGGAACTGG--GTTGCGATAAACACTATATTGTACAA 44494 | | |||| || | |||| | || |||| |||| | | || | |||||| Sbjct 12330 GTTCGTTGCTGACGGCATACTCGTTGATCTGGGCGTTGGGCGCA--GGTACAACGTACAA 12387 Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || ||||||||||| ||||| ||||||||| || ||||| || ||||| ||||| || Sbjct 12388 AATCCGTTTGATTTCATGGAGAATATTTCGCTGTTTGGCAAGACGAACTTCTTTGAGAAG 12447 Query 44555 CGCGTTGGAGAATATCAG 44572 | |||| || |||||| Sbjct 12448 AGAGTTGCTGAGTATCAG 12465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454498361550