Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq168 87.8 2e-12 >seq168 Length=41216 Score = 87.8 bits (96), Expect = 2e-12 Identities = 200/298 (67%), Gaps = 16/298 (5%) Strand=Plus/Minus Query 169159 ATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAG 169218 ||||| || || ||||||||||| || ||||||| ||| ||| ||||| || |||| Sbjct 22900 ATTGATGATAAGGCCCTTGATGTGCGAGCCGTCGTGATCTTGATCTGTCATTATTATGAC 22841 Query 169219 ACGACCATACCGAAG---CTCGGAAACATCTTGA----TAGTCCTTACCCTGTTGAAGAC 169271 | || ||||| || ||| | |||| |||||||| || || || | Sbjct 22840 GTGGCCGTACCGCAGGCTCTCCG-------TTGATGTGTAGTCCTTGTGGTGCTGCAG-C 22789 Query 169272 CCAAG-ATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCA 169330 |||| || ||||| |||| ||||| ||| | ||| ||| ||| || || Sbjct 22788 GCAAGTATTTTCTTCAGATTGTTGAGCTCCTCGTTCTCCATGATCTGCTTGTGGTTCGCC 22729 Query 169331 TCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACG 169390 ||||| || ||| ||| || || ||||| || || ||||||| || | ||||| Sbjct 22728 TCGCGCACGTTCAGCAGCTTGCCGCGCAGAGGAAACACGCCGTAGTAGTCCCTGCCAACC 22669 Query 169391 ACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCG 169448 || || || || | || || ||||| |||||||| |||||||||| ||||||| Sbjct 22668 ACCGACAGGCCGCTTATGGCAAGCGTCTTGGCCGAGTCTCCCTCGGTGAGAATGAGCG 22611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258539864400